Full Tree, Last Updated: September 8, 2024
Enabled by data from
Enabled by data from
Up to 10k descendants are displayed below. Click "Download Descendants" to download all.
| Row | Recombinant Node ID | Donor Node ID | Acceptor Node ID | Recomb Number Samples | Donor Number Samples | Acceptor Number Samples | Breakpoint 1 Interval | Breakpoint 2 Interval | Recombinant Clade | Recombinant Lineage | Donor Clade | Donor Lineage | Acceptor Clade | Acceptor Lineage | Chronumental-inferred origin date | Recombinant Ranking Score | Representative Descendant | Informative Site Sequence | 3SEQ (M, N, K) | 3SEQ P-Value | Original Parsimony Score | Parsimony Score Improvement | Quality Control (QC) Flags | Click to View |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | node_763477 | node_942432 | node_736971 | 22 | 4 | 101432 | (26858,27382) | (27810,28958) | 24A (JN.1) | JN.1 | 21K (BA.1) | BA.1.1 | 23I (BA.2.86) | BA.2.86.1 | 2023-12-25 | 0.00283051 | USA/OR-S24572/2023|PP319493.1|2023-12-01 | BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBAAAABB | (91, 4, 4) | 2.88986e-05 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 1 | node_751406 | node_280284 | node_739350 | 33 | 5 | 17 | (18894,20844) | (21044,21622) | 24A (JN.1) | JN.1.4 | 21L (BA.2) | BA.2.10 | 24A (JN.1) | JN.1 | 2024-01-02 | 0.000976562 | USA/MIS-L373288725/2024|PP399254.1|2024-01-12 | BBBBBBBBBBBBBBBBBBBBBAAAABBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB | (62, 4, 4) | 8.74126e-05 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 2 | node_755588 | node_282525 | node_749250 | 31 | 7 | 4 | (897,910) | (1507,3431) | 24A (JN.1) | JN.1.4 | 22F (XBB) | XBB.1 | 24A (JN.1) | JN.1 | 2023-12-23 | 0.000915527 | USA/CA-GBW-H20-361-5118/2024|PQ026211.1|2024-02-16 | BBBAAAABBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB | (71, 4, 4) | 5.92373e-05 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 3 | node_401151 | node_225544 | node_401131 | 7 | 2818125 | 350 | (26275,27384) | (27688,29706) | 23E (XBB.2.3) | KT.1.1 | 21M (Omicron) | BA.2_dropout | 23E (XBB.2.3) | KT.1.1 | 2024-01-18 | 0.000610352 | USA/SD-INBRE-02937/2023|PP737281.1|2023 | BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBAAAB | (44, 3, 3) | 0.00277521 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 4 | node_401151 | node_227984 | node_401131 | 7 | 4 | 350 | (27382,27384) | - | 23E (XBB.2.3) | KT.1.1 | 21L (BA.2) | miscBA2BA1PostSpike | 23E (XBB.2.3) | KT.1.1 | 2024-01-18 | 0.000610352 | USA/SD-INBRE-02937/2023|PP737281.1|2023 | BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBAAA | (44, 3, 3) | 0.00277521 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 5 | node_401151 | node_281855 | node_401131 | 7 | 3 | 350 | (25976,27384) | (27688,29706) | 23E (XBB.2.3) | KT.1.1 | 22F (XBB) | XBB.1 | 23E (XBB.2.3) | KT.1.1 | 2024-01-18 | 0.000610352 | USA/SD-INBRE-02937/2023|PP737281.1|2023 | BBBBBBBBBBBBBBBBBBBAAAB | (20, 3, 3) | 0.0118577 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 6 | node_401151 | node_398117 | node_401131 | 7 | 8 | 350 | (26510,27384) | - | 23E (XBB.2.3) | KT.1.1 | 23E (XBB.2.3) | GJ.1.2 | 23E (XBB.2.3) | KT.1.1 | 2024-01-18 | 0.000610352 | USA/SD-INBRE-02937/2023|PP737281.1|2023 | BBBBBBBBBBBBBBBBBBBBBBBAAA | (23, 3, 3) | 0.00923077 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 7 | node_401151 | node_1005057 | node_401131 | 7 | 19 | 350 | (26858,27384) | (27688,29510) | 23E (XBB.2.3) | KT.1.1 | 21K (BA.1) | BA.1.1 | 23E (XBB.2.3) | KT.1.1 | 2024-01-18 | 0.000610352 | USA/SD-INBRE-02937/2023|PP737281.1|2023 | BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBAAABB | (77, 3, 3) | 0.000949367 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 8 | node_757651 | node_295956 | node_742478 | 6 | 96 | 185 | (27915,28054) | - | 24A (JN.1) | JN.1 | 23B (XBB.1.16) | XDA | 24A (JN.1) | JN.1.64 | 2024-01-30 | 0.000488281 | England/CLIMB-CM7Y89T5/2024|OZ015204.1|2024-01-31 | BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBAAAA | (83, 4, 4) | 3.77376e-05 | 5 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 9 | node_749308 | node_260347 | node_749295 | 17 | 35 | 206 | (3565,5703) | (5705,6183) | 24A (JN.1) | JN.1 | 21L (BA.2) | BA.2 | 24A (JN.1) | JN.1 | 2023-12-14 | 0.000282288 | Northern_Ireland/CLIMB-CM7YRS3B/2024|OZ006248.1|2024-01-02 | BBBBAAABBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB | (58, 3, 3) | 0.00163934 | 3 | 3 | cluster, |
View Tree
|
| 10 | node_295859 | node_282035 | node_295839 | 32 | 494 | 328 | (22106,22927) | (24046,25839) | 23B (XBB.1.16) | XDM | 22F (XBB) | GW.5.1 | 23B (XBB.1.16) | XDA | 2023-11-25 | 0.00025177 | England/CLIMB-CM7YKEJB/2023|OY990786.1|2023-12-17 | BBBBBBBBBBBBBBBBBAAAAAABBBBBBBB | (25, 6, 6) | 3.53126e-05 | 6 | 6 | Too_many_mutations_near_INDELs, |
View Tree
|
| 11 | node_295859 | node_281935 | node_295839 | 32 | 96 | 328 | (22106,22927) | (24046,27059) | 23B (XBB.1.16) | XDM | 22F (XBB) | GW.5.3 | 23B (XBB.1.16) | XDA | 2023-11-25 | 0.00025177 | England/CLIMB-CM7YKEJB/2023|OY990786.1|2023-12-17 | BBBBBBBBBBBBBBBBBBBAAAAAABBBBBBB | (26, 6, 6) | 2.9795e-05 | 6 | 6 | PASS |
View Tree
|
| 12 | node_763256 | node_735987 | node_737074 | 13 | 6 | 100972 | (18894,21425) | (21429,22926) | 24A (JN.1) | JN.1 | 23I (BA.2.86) | BA.2.86.1 | 24A (JN.1) | JN.1 | 2023-12-11 | 0.000179291 | USA/MIS-L373426142/2024|PP413360.1|2024-01-18 | BBBBAAABBB | (7, 3, 3) | 0.0666667 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump, |
View Tree
|
| 13 | node_354624 | node_296447 | node_353451 | 269 | 67 | 102 | (23673,25045) | - | 23G (XBB.1.5.70) | XCR | 23B (XBB.1.16) | FU.1.1 | 23G (XBB.1.5.70) | GK.1.1.1 | 2023-09-10 | 0.000111103 | USA/WA-CDC-UW23102378979/2023|OR815421.1|2023-10-23 | BBBBBBBBBBBBBBBBBBBBAAAAAAAAAAAA | (20, 12, 12) | 9.30056e-08 | 5 | 4 | PASS |
View Tree
|
| 14 | node_354624 | node_340947 | node_353451 | 269 | 4 | 102 | (18492,25045) | - | 23G (XBB.1.5.70) | XCR | 23D (XBB.1.9) | XBB.1.9 | 23G (XBB.1.5.70) | GK.1.1.1 | 2023-09-10 | 0.000111103 | USA/WA-CDC-UW23102378979/2023|OR815421.1|2023-10-23 | BBBBBBBBBBBBAAAAAAAAAAAA | (12, 12, 12) | 4.80742e-06 | 5 | 4 | Too_many_mutations_near_INDELs, |
View Tree
|
| 15 | node_443268 | node_443267 | node_329212 | 124 | 125 | 6 | (7051,19326) | - | 21L (BA.2) | XCT | 21L (BA.2) | BA.2 | 23F (EG.5.1) | JG.4 | 2023-09-23 | 0.000103951 | Denmark/DCGC-666211/2023|OY984798.1|2023-12-04 | BBBAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | (3, 35, 35) | 0.000474158 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 16 | node_281809 | node_433101 | node_281805 | 390299 | 20 | 390318 | (22331,22577) | - | 22F (XBB) | XBB | 22D (BA.2.75) | BY.1 | 21L (BA.2) | XBB_dropout | 2022-11-26 | 8.62455e-05 | USA/CA-SEARCH-138166/2023|PP342910.1|2023-10-25 | BBBBBBBBBBBBBBBBBBBBAAAAAAA | (20, 7, 7) | 2.36479e-05 | 4 | 4 | Too_many_mutations_near_INDELs, |
View Tree
|
| 17 | node_281809 | node_281798 | node_281808 | 390299 | 8 | 390300 | (19326,22577) | (22895,22942) | 22F (XBB) | XBB | 21L (BA.2) | BJ.1 | 21L (BA.2) | XBB_dropout | 2022-11-26 | 8.62455e-05 | USA/CA-SEARCH-138166/2023|PP342910.1|2023-10-25 | BAAAABBBBBBBBBBBBBB | (15, 4, 4) | 0.00412797 | 4 | 4 | Too_many_mutations_near_INDELs, |
View Tree
|
| 18 | node_281809 | node_281798 | node_281807 | 390299 | 8 | 390301 | (19326,22577) | (22896,22942) | 22F (XBB) | XBB | 21L (BA.2) | BJ.1 | 21L (BA.2) | XBB_dropout | 2022-11-26 | 8.62455e-05 | USA/CA-SEARCH-138166/2023|PP342910.1|2023-10-25 | BAAAAABBBBBBBBBBBBBB | (15, 5, 5) | 0.00103199 | 4 | 4 | Too_many_mutations_near_INDELs, |
View Tree
|
| 19 | node_348896 | node_348895 | node_317259 | 116 | 118 | 24 | (12789,14634) | - | 23A (XBB.1.5) | XCP | 23A (XBB.1.5) | JD.1.1 | 23F (EG.5.1) | EG.5.1.10 | 2023-09-28 | 7.80821e-05 | Denmark/DCGC-665875/2023|OY984490.1|2023-11-27 | BBBAAAAAAAAAAAAAAAAA | (3, 17, 17) | 0.00350877 | 3 | 3 | PASS |
View Tree
|
| 20 | node_348896 | node_348571 | node_317259 | 116 | 5 | 24 | (14189,14634) | - | 23A (XBB.1.5) | XCP | 23A (XBB.1.5) | JD.1.1.7 | 23F (EG.5.1) | EG.5.1.10 | 2023-09-28 | 7.80821e-05 | Denmark/DCGC-665875/2023|OY984490.1|2023-11-27 | BBBBBBAAAAAAAAAAAAAAAAA | (6, 17, 17) | 6.93433e-05 | 3 | 3 | Alt, |
View Tree
|
| 21 | node_348896 | node_347501 | node_317259 | 116 | 4180 | 24 | (14189,14634) | - | 23A (XBB.1.5) | XCP | 23A (XBB.1.5) | JD.1.1 | 23F (EG.5.1) | EG.5.1.10 | 2023-09-28 | 7.80821e-05 | Denmark/DCGC-665875/2023|OY984490.1|2023-11-27 | BBBBBBBBBAAAAAAAAAAAAAAAAA | (9, 17, 17) | 3.20046e-06 | 3 | 3 | Alt, |
View Tree
|
| 22 | node_354620 | node_283457 | node_353045 | 276 | 4 | 3002 | (23673,25045) | - | 23G (XBB.1.5.70) | XBB.1.5.70 | 22F (XBB) | FY.3 | 23G (XBB.1.5.70) | GK.1 | 2023-07-25 | 5.59241e-05 | USA/CO-CDPHE-41591245/2023|PP131104.1|2023-12-08 | BBBBBBBBBBBAAAAAAA | (11, 7, 7) | 0.000377074 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
View Tree
|
| 23 | node_354620 | node_293453 | node_353039 | 276 | 4 | 5091 | (22995,23673) | - | 23G (XBB.1.5.70) | XBB.1.5.70 | 23B (XBB.1.16) | XBB.1.16.6 | 23G (XBB.1.5.70) | XBB.1.5.70 | 2023-07-25 | 5.59241e-05 | USA/CO-CDPHE-41591245/2023|PP131104.1|2023-12-08 | BBBBBBBBBBBBBBBBBBBBBAAAAAAA | (21, 7, 7) | 1.85805e-05 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 24 | node_354620 | node_340947 | node_353039 | 276 | 4 | 5091 | (18492,23673) | - | 23G (XBB.1.5.70) | XBB.1.5.70 | 23D (XBB.1.9) | XBB.1.9 | 23G (XBB.1.5.70) | XBB.1.5.70 | 2023-07-25 | 5.59241e-05 | USA/CO-CDPHE-41591245/2023|PP131104.1|2023-12-08 | BBBBBBBBBBBAAAAAAA | (11, 7, 7) | 0.000377074 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 25 | node_353073 | node_340928 | node_353069 | 590 | 15 | 650 | (18492,25045) | - | 23G (XBB.1.5.70) | XCH | 23D (XBB.1.9) | XBB.1.9 | 23G (XBB.1.5.70) | GK.1.3 | 2023-08-05 | 5.44675e-05 | USA/CA-CDPH-500126710/2023|OR875705.1|2023-09-24 | BBBBBBBBBBBBBBAAAAAAA | (14, 7, 7) | 0.000128999 | 6 | 6 | Alt, |
View Tree
|
| 26 | node_353073 | node_340928 | node_353072 | 590 | 15 | 591 | (18492,25045) | - | 23G (XBB.1.5.70) | XCH | 23D (XBB.1.9) | XBB.1.9 | 23G (XBB.1.5.70) | GK.1.3 | 2023-08-05 | 5.44675e-05 | USA/CA-CDPH-500126710/2023|OR875705.1|2023-09-24 | BBBBBBBBBBBBBBAAAAAA | (14, 6, 6) | 0.000386997 | 6 | 6 | redundant, |
View Tree
|
| 27 | node_736478 | node_352917 | node_736477 | 9 | 4 | 15 | (26833,27915) | - | 23I (BA.2.86) | BA.2.86.1 | 23A (XBB.1.5) | XBB.1.5_17124 | 23I (BA.2.86) | BA.2.86.1 | 2023-11-22 | 5.34058e-05 | USA/TN-SPHL-21824/2023|PP826489.1|2023-11-21 | BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBAAA | (67, 3, 3) | 0.00124224 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 28 | node_295829 | node_299540 | node_299216 | 618 | 3 | 15 | (22928,22995) | (28297,28447) | 23B (XBB.1.16) | XBB.1.16 | 23B (XBB.1.16) | XBB.1.16 | 23B (XBB.1.16) | XBB.1.16 | 2023-06-14 | 4.95538e-05 | England/CLIMB-CM7YRXFB/2023|OY983842.1|2023-12-10 | BBAAABB | (4, 3, 3) | 0.142857 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 29 | node_295829 | node_300781 | node_284519 | 618 | 4 | 47836 | (18703,22101) | - | 23B (XBB.1.16) | XBB.1.16 | 23D (XBB.1.9) | XBB.1.9.1 | 23B (XBB.1.16) | XBB.1.16 | 2023-06-14 | 4.95538e-05 | England/CLIMB-CM7YRXFB/2023|OY983842.1|2023-12-10 | BBBBBBAAAAA | (6, 5, 5) | 0.0151515 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 30 | node_295829 | node_300781 | node_284637 | 618 | 4 | 24 | (18703,22928) | - | 23B (XBB.1.16) | XBB.1.16 | 23D (XBB.1.9) | XBB.1.9.1 | 23B (XBB.1.16) | XBB.1.16 | 2023-06-14 | 4.95538e-05 | England/CLIMB-CM7YRXFB/2023|OY983842.1|2023-12-10 | BBBBBBAAAAA | (6, 5, 5) | 0.0151515 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 31 | node_295829 | node_300781 | node_294875 | 618 | 4 | 11 | (18703,22101) | - | 23B (XBB.1.16) | XBB.1.16 | 23D (XBB.1.9) | XBB.1.9.1 | 23B (XBB.1.16) | XBB.1.16 | 2023-06-14 | 4.95538e-05 | England/CLIMB-CM7YRXFB/2023|OY983842.1|2023-12-10 | BBBBBBAAA | (6, 3, 3) | 0.0833333 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 32 | node_295829 | node_300781 | node_299199 | 618 | 4 | 45 | (18703,22928) | - | 23B (XBB.1.16) | XBB.1.16 | 23D (XBB.1.9) | XBB.1.9.1 | 23B (XBB.1.16) | XBB.1.16 | 2023-06-14 | 4.95538e-05 | England/CLIMB-CM7YRXFB/2023|OY983842.1|2023-12-10 | BBBBBBAAA | (6, 3, 3) | 0.0833333 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 33 | node_295829 | node_300781 | node_299203 | 618 | 4 | 10 | (18703,22928) | - | 23B (XBB.1.16) | XBB.1.16 | 23D (XBB.1.9) | XBB.1.9.1 | 23B (XBB.1.16) | XBB.1.16 | 2023-06-14 | 4.95538e-05 | England/CLIMB-CM7YRXFB/2023|OY983842.1|2023-12-10 | BBBBBBAAA | (6, 3, 3) | 0.0833333 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 34 | node_295829 | node_300781 | node_299216 | 618 | 4 | 15 | (18703,22995) | - | 23B (XBB.1.16) | XBB.1.16 | 23D (XBB.1.9) | XBB.1.9.1 | 23B (XBB.1.16) | XBB.1.16 | 2023-06-14 | 4.95538e-05 | England/CLIMB-CM7YRXFB/2023|OY983842.1|2023-12-10 | BBBBBBAAA | (6, 3, 3) | 0.0833333 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 35 | node_295829 | node_308168 | node_299216 | 618 | 4 | 15 | (21137,22995) | - | 23B (XBB.1.16) | XBB.1.16 | 23D (XBB.1.9) | HN.1 | 23B (XBB.1.16) | XBB.1.16 | 2023-06-14 | 4.95538e-05 | England/CLIMB-CM7YRXFB/2023|OY983842.1|2023-12-10 | BBBBBBBBAAA | (8, 3, 3) | 0.0545455 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 36 | node_295829 | node_308168 | node_284519 | 618 | 4 | 47836 | (21137,22101) | - | 23B (XBB.1.16) | XBB.1.16 | 23D (XBB.1.9) | HN.1 | 23B (XBB.1.16) | XBB.1.16 | 2023-06-14 | 4.95538e-05 | England/CLIMB-CM7YRXFB/2023|OY983842.1|2023-12-10 | BBBBBBBBAAAAA | (8, 5, 5) | 0.00699301 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 37 | node_295829 | node_308168 | node_284637 | 618 | 4 | 24 | (21137,22928) | - | 23B (XBB.1.16) | XBB.1.16 | 23D (XBB.1.9) | HN.1 | 23B (XBB.1.16) | XBB.1.16 | 2023-06-14 | 4.95538e-05 | England/CLIMB-CM7YRXFB/2023|OY983842.1|2023-12-10 | BBBBBBBBAAAAA | (8, 5, 5) | 0.00699301 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 38 | node_295829 | node_300781 | node_299198 | 618 | 4 | 61 | (18703,22928) | - | 23B (XBB.1.16) | XBB.1.16 | 23D (XBB.1.9) | XBB.1.9.1 | 23B (XBB.1.16) | XBB.1.16 | 2023-06-14 | 4.95538e-05 | England/CLIMB-CM7YRXFB/2023|OY983842.1|2023-12-10 | BBBBBBAAA | (6, 3, 3) | 0.0833333 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 39 | node_348895 | node_347501 | node_284649 | 118 | 4180 | 9 | (14189,14634) | - | 23A (XBB.1.5) | JD.1.1 | 23A (XBB.1.5) | JD.1.1 | 23B (XBB.1.16) | XBB.1.16 | 2023-09-07 | 3.93987e-05 | Scotland/CLIMB-CM7YROTS/2023|OY989462.1|2023-12-02 | BBBBBBAAAAAAAAAAAAAA | (6, 14, 14) | 0.000180599 | 3 | 3 | Alt, |
View Tree
|
| 40 | node_348895 | node_348571 | node_284649 | 118 | 5 | 9 | (14189,14634) | - | 23A (XBB.1.5) | JD.1.1 | 23A (XBB.1.5) | JD.1.1.7 | 23B (XBB.1.16) | XBB.1.16 | 2023-09-07 | 3.93987e-05 | Scotland/CLIMB-CM7YROTS/2023|OY989462.1|2023-12-02 | BBBAAAAAAAAAAAAAA | (3, 14, 14) | 0.00588235 | 3 | 3 | PASS |
View Tree
|
| 41 | node_348895 | node_239943 | node_348571 | 118 | 4 | 5 | (7851,9693) | (14189,14634) | 23A (XBB.1.5) | JD.1.1 | 21L (BA.2) | BA.2 | 23A (XBB.1.5) | JD.1.1.7 | 2023-09-07 | 3.93987e-05 | Scotland/CLIMB-CM7YROTS/2023|OY989462.1|2023-12-02 | BBBBAAABBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB | (38, 3, 3) | 0.00365854 | 3 | 3 | Alt, |
View Tree
|
| 42 | node_348895 | node_347501 | node_443265 | 118 | 4180 | 127 | (14189,14634) | - | 23A (XBB.1.5) | JD.1.1 | 23A (XBB.1.5) | JD.1.1 | 21L (BA.2) | BA.2 | 2023-09-07 | 3.93987e-05 | Scotland/CLIMB-CM7YROTS/2023|OY989462.1|2023-12-02 | BBBBBBAAAAAAAAAAAAAAAAAAAAAAAAAAAA | (6, 28, 28) | 5.20483e-06 | 3 | 3 | Alt, |
View Tree
|
| 43 | node_735987 | node_763256 | node_735986 | 6 | 13 | 11 | (18894,21425) | (21429,22926) | 23I (BA.2.86) | BA.2.86.1 | 24A (JN.1) | JN.1 | 23I (BA.2.86) | BA.2.86.1 | 2023-10-21 | 3.48091e-05 | Northern_Ireland/CLIMB-CM7YMCIJ/2023|OY758091.1|2023-09-27 | BBBBAAABBB | (7, 3, 3) | 0.0666667 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump, |
View Tree
|
| 44 | node_340915 | node_394618 | node_323815 | 6 | 10 | 12 | (13665,15656) | - | 23D (XBB.1.9) | XBB.1.9 | 22F (XBB) | GA.4.1 | 23F (EG.5.1) | EG.5.1.1 | 2023-11-14 | 3.05176e-05 | USA/UT-UPHL-240124806806/2023|PP541068.1|2023-12-01 | BBBBBBBBBBBBBBBAAAAAAAAAAAAABAAAAAAA | (16, 20, 19) | 7.67665e-08 | 17 | 13 | Too_many_mutations_near_INDELs, |
View Tree
|
| 45 | node_353854 | node_353860 | node_353838 | 7 | 12 | 43 | (8668,20762) | - | 23G (XBB.1.5.70) | GK.1.10 | 23G (XBB.1.5.70) | GK.1.10.1 | 23G (XBB.1.5.70) | GK.1.10 | 2023-11-15 | 3.05176e-05 | England/CLIMB-CM7YEUTJ/2023|OY990463.1|2023-12-10 | BBBAAA | (3, 3, 3) | 0.2 | 7 | 3 | PASS |
View Tree
|
| 46 | node_336859 | node_331344 | node_332956 | 19 | 5 | 20 | (7086,21772) | (22034,22570) | 23F (EG.5.1) | HV.1 | 23F (EG.5.1) | JG.3 | 23F (EG.5.1) | EG.5.1.6 | 2023-09-17 | 2.81334e-05 | USA/CA-SEARCH-139460/2023|PP351223.1|2023-12-13 | BBBAAAABBBB | (7, 4, 4) | 0.0242424 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 47 | node_336859 | node_324779 | node_333162 | 19 | 7 | 21386 | (13627,21941) | (22034,22917) | 23F (EG.5.1) | HV.1 | 23F (EG.5.1) | HK.19 | 23F (EG.5.1) | HV.1 | 2023-09-17 | 2.81334e-05 | USA/CA-SEARCH-139460/2023|PP351223.1|2023-12-13 | BBBAAABB | (5, 3, 3) | 0.107143 | 3 | 3 | PASS |
View Tree
|
| 48 | node_336859 | node_324779 | node_332956 | 19 | 7 | 20 | (13627,21772) | (22034,22917) | 23F (EG.5.1) | HV.1 | 23F (EG.5.1) | HK.19 | 23F (EG.5.1) | EG.5.1.6 | 2023-09-17 | 2.81334e-05 | USA/CA-SEARCH-139460/2023|PP351223.1|2023-12-13 | BBBAAAABB | (5, 4, 4) | 0.0476191 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 49 | node_443266 | node_428326 | node_317294 | 126 | 1042 | 31 | (18583,19326) | (25959,27507) | 21L (BA.2) | BA.2 | 23C (CH.1.1) | DV.7.1 | 23F (EG.5.1) | EG.5.1 | 2023-08-10 | 2.6226e-05 | England/CLIMB-CM7YKDNX/2023|OY983771.1|2023-12-06 | BBBBBBBBBBBBBBBBBBBBBBBBAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBB | (27, 31, 31) | 1.06657e-15 | 11 | 10 | Too_many_mutations_near_INDELs, |
View Tree
|
| 50 | node_331344 | node_336865 | node_330142 | 5 | 4 | 3916 | (7086,21941) | (22034,22570) | 23F (EG.5.1) | JG.3 | 23F (EG.5.1) | HV.1 | 23F (EG.5.1) | JG.3 | 2023-10-25 | 2.28882e-05 | USA/CA-SEARCH-139267/2024|PP351074.1|2024-01-16 | BBAAAABBBB | (6, 4, 4) | 0.0333333 | 7 | 4 | PASS |
View Tree
|
| 51 | node_331344 | node_336859 | node_330142 | 5 | 19 | 3916 | (7086,21941) | (22034,22570) | 23F (EG.5.1) | JG.3 | 23F (EG.5.1) | HV.1 | 23F (EG.5.1) | JG.3 | 2023-10-25 | 2.28882e-05 | USA/CA-SEARCH-139267/2024|PP351074.1|2024-01-16 | BBBAAAABBBB | (7, 4, 4) | 0.0242424 | 7 | 4 | Alt, |
View Tree
|
| 52 | node_331344 | node_324782 | node_330142 | 5 | 3 | 3916 | (13627,21941) | (22034,22570) | 23F (EG.5.1) | JG.3 | 23F (EG.5.1) | HK.19 | 23F (EG.5.1) | JG.3 | 2023-10-25 | 2.28882e-05 | USA/CA-SEARCH-139267/2024|PP351074.1|2024-01-16 | BBBBAAAABBB | (7, 4, 4) | 0.0242424 | 7 | 4 | Alt, |
View Tree
|
| 53 | node_331344 | node_324779 | node_330142 | 5 | 7 | 3916 | (13627,21941) | (22034,22570) | 23F (EG.5.1) | JG.3 | 23F (EG.5.1) | HK.19 | 23F (EG.5.1) | JG.3 | 2023-10-25 | 2.28882e-05 | USA/CA-SEARCH-139267/2024|PP351074.1|2024-01-16 | BBBBAAAABBBB | (8, 4, 4) | 0.0181818 | 7 | 4 | Alt, |
View Tree
|
| 54 | node_281930 | node_295859 | node_281855 | 799 | 32 | 3 | (22928,22995) | (24046,27059) | 22F (XBB) | XBB.1.19.1 | 23B (XBB.1.16) | XDM | 22F (XBB) | XBB.1 | 2023-05-04 | 2.13241e-05 | England/CLIMB-CM7YJIHT/2023|OY747089.1|2023-09-29 | BBBBBBBBBBBBBBBBBAAAAABBBB | (21, 5, 5) | 0.000334448 | 8 | 5 | Too_many_mutations_near_INDELs, |
View Tree
|
| 55 | node_328359 | node_326868 | node_335441 | 6 | 302 | 10 | (13627,18326) | - | 23F (EG.5.1) | EG.5.1 | 23H (HK.3) | HK.3 | 23F (EG.5.1) | HV.1 | 2023-11-07 | 1.90735e-05 | USA/NY-CDC-LC1075687/2023|OR985831.1|2023-12-08 | BBBBBAAAAAA | (5, 6, 6) | 0.012987 | 5 | 3 | PASS |
View Tree
|
| 56 | node_340933 | node_340928 | node_338142 | 10 | 15 | 251 | (22033,22480) | - | 23D (XBB.1.9) | XBB.1.9 | 23D (XBB.1.9) | XBB.1.9 | 23F (EG.5.1) | HV.1 | 2023-10-24 | 1.90735e-05 | Northern_Ireland/CLIMB-CM7YE9RX/2023|OY932664.1|2023-11-06 | BBBBAAAAAAAAAAAA | (4, 12, 12) | 0.00274725 | 7 | 4 | PASS |
View Tree
|
| 57 | node_340933 | node_338047 | node_340928 | 10 | 6 | 15 | (583,5835) | (22033,22480) | 23D (XBB.1.9) | XBB.1.9 | 23F (EG.5.1) | HV.1 | 23D (XBB.1.9) | XBB.1.9 | 2023-10-24 | 1.90735e-05 | Northern_Ireland/CLIMB-CM7YE9RX/2023|OY932664.1|2023-11-06 | BAAAABBBBBBBBBBBB | (13, 4, 4) | 0.00588235 | 7 | 4 | Too_many_mutations_near_INDELs, |
View Tree
|
| 58 | node_352989 | node_340950 | node_370512 | 5228 | 6 | 6 | (18492,22624) | - | 23A (XBB.1.5) | XBB.1.5_17124 | 23D (XBB.1.9) | XCY | 23A (XBB.1.5) | XBB.1.5_17124 | 2023-03-15 | 1.87545e-05 | USA/NY-CDC-LC1051125/2023|OR494712.1|2023-08-16 | BBBBBBBBAAAAAA | (8, 6, 6) | 0.002997 | 4 | 4 | Too_many_mutations_near_INDELs, |
View Tree
|
| 59 | node_300205 | node_340504 | node_289521 | 8 | 10 | 539 | (9049,11750) | (22101,23123) | 22F (XBB) | XBB.1 | 23D (XBB.1.9) | XBB.1.42.2 | 23B (XBB.1.16) | XBB.1.16.11 | 2023-10-23 | 1.81198e-05 | USA/NJ-CDC-QDX86945966/2023|OR817460.1|2023-10-27 | BBBBAAAAAAAAABBBBBBB | (11, 9, 9) | 7.14456e-05 | 11 | 6 | PASS |
View Tree
|
| 60 | node_300205 | node_314051 | node_289521 | 8 | 19 | 539 | (5720,5784) | (22101,22995) | 22F (XBB) | XBB.1 | 23D (XBB.1.9) | EG.1 | 23B (XBB.1.16) | XBB.1.16.11 | 2023-10-23 | 1.81198e-05 | USA/NJ-CDC-QDX86945966/2023|OR817460.1|2023-10-27 | BBAAAAAAAAABBBBBBBBBB | (12, 9, 9) | 4.42282e-05 | 11 | 6 | Alt, |
View Tree
|
| 61 | node_396755 | node_288511 | node_396753 | 46 | 37 | 50 | (23522,25410) | - | 23E (XBB.2.3) | JY.1 | 23B (XBB.1.16) | XBB.1.16 | 23E (XBB.2.3) | JY.1 | 2023-09-05 | 1.70469e-05 | USA/DE-CDC-LC1073473/2023|OR952089.1|2023-11-27 | BBBBBBBBBBBBBBBBBBBBBBBAAAAAAA | (23, 7, 7) | 1.1789e-05 | 6 | 5 | PASS |
View Tree
|
| 62 | node_396755 | node_288511 | node_396754 | 46 | 37 | 47 | (23522,25410) | - | 23E (XBB.2.3) | JY.1 | 23B (XBB.1.16) | XBB.1.16 | 23E (XBB.2.3) | JY.1 | 2023-09-05 | 1.70469e-05 | USA/DE-CDC-LC1073473/2023|OR952089.1|2023-11-27 | BBBBBBBBBBBBBBBBBBBBBBBAAAAA | (23, 5, 5) | 0.0002442 | 6 | 5 | Too_many_mutations_near_INDELs, |
View Tree
|
| 63 | node_334854 | node_284805 | node_333162 | 30 | 11 | 21386 | (18703,21294) | (21296,21718) | 23F (EG.5.1) | HV.1 | 23B (XBB.1.16) | XBB.1.16 | 23F (EG.5.1) | HV.1 | 2023-09-12 | 1.57952e-05 | USA/PA-CDC-LC1071304/2023|OR916887.1|2023-11-20 | BBBBBBBBBBBBAAABBBBBBBBBBB | (23, 3, 3) | 0.00923077 | 3 | 3 | cluster, |
View Tree
|
| 64 | node_334854 | node_226882 | node_333162 | 30 | 7 | 21386 | (19518,21294) | (21296,21718) | 23F (EG.5.1) | HV.1 | 21L (BA.2) | BA.2 | 23F (EG.5.1) | HV.1 | 2023-09-12 | 1.57952e-05 | USA/PA-CDC-LC1071304/2023|OR916887.1|2023-11-20 | BBBBBBBBBBBBBBBBBAAABBBBBBBBBBBBBBBBBBBBBBBBBBB | (44, 3, 3) | 0.00277521 | 3 | 3 | cluster, |
View Tree
|
| 65 | node_334854 | node_318426 | node_333162 | 30 | 3 | 21386 | (19170,21294) | (21296,22033) | 23F (EG.5.1) | HV.1 | 23F (EG.5.1) | HK.28 | 23F (EG.5.1) | HV.1 | 2023-09-12 | 1.57952e-05 | USA/PA-CDC-LC1071304/2023|OR916887.1|2023-11-20 | BBBBAAABBB | (7, 3, 3) | 0.0666667 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
View Tree
|
| 66 | node_334854 | node_318426 | node_332956 | 30 | 3 | 20 | (19170,21294) | (21772,22033) | 23F (EG.5.1) | HV.1 | 23F (EG.5.1) | HK.28 | 23F (EG.5.1) | EG.5.1.6 | 2023-09-12 | 1.57952e-05 | USA/PA-CDC-LC1071304/2023|OR916887.1|2023-11-20 | BBBBAAAABBB | (7, 4, 4) | 0.0242424 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
View Tree
|
| 67 | node_354616 | node_295839 | node_353039 | 283 | 328 | 5091 | (23664,25045) | (28297,28471) | 23G (XBB.1.5.70) | XBB.1.5.70 | 23B (XBB.1.16) | XDA | 23G (XBB.1.5.70) | XBB.1.5.70 | 2023-05-30 | 1.41747e-05 | USA/CO-CDPHE-41579955/2023|PP203692.1|2023-12-03 | BBBBBBBBBBBBBBBBBBBBAAAB | (21, 3, 3) | 0.0108696 | 3 | 3 | Alt, |
View Tree
|
| 68 | node_354616 | node_307717 | node_353039 | 283 | 3 | 5091 | (23664,25045) | - | 23G (XBB.1.5.70) | XBB.1.5.70 | 23D (XBB.1.9) | FL.1.5.1 | 23G (XBB.1.5.70) | XBB.1.5.70 | 2023-05-30 | 1.41747e-05 | USA/CO-CDPHE-41579955/2023|PP203692.1|2023-12-03 | BBBBBBBBBBBBBBBBBBBBBAAA | (21, 3, 3) | 0.0108696 | 3 | 3 | Alt, |
View Tree
|
| 69 | node_354616 | node_295859 | node_353039 | 283 | 32 | 5091 | (23222,25045) | (28297,28471) | 23G (XBB.1.5.70) | XBB.1.5.70 | 23B (XBB.1.16) | XDM | 23G (XBB.1.5.70) | XBB.1.5.70 | 2023-05-30 | 1.41747e-05 | USA/CO-CDPHE-41579955/2023|PP203692.1|2023-12-03 | BBBBBBBBBBBBBBBBBBAAAB | (19, 3, 3) | 0.012987 | 3 | 3 | Alt, |
View Tree
|
| 70 | node_354616 | node_340950 | node_353039 | 283 | 6 | 5091 | (18492,25045) | - | 23G (XBB.1.5.70) | XBB.1.5.70 | 23D (XBB.1.9) | XCY | 23G (XBB.1.5.70) | XBB.1.5.70 | 2023-05-30 | 1.41747e-05 | USA/CO-CDPHE-41579955/2023|PP203692.1|2023-12-03 | BBBBBBBBBBBAAA | (11, 3, 3) | 0.032967 | 3 | 3 | PASS |
View Tree
|
| 71 | node_393537 | node_296360 | node_393533 | 9 | 6 | 23 | (21952,22101) | (23929,28297) | 22F (XBB) | XBB.1.5.110 | 23B (XBB.1.16) | XBB.1.16 | 22F (XBB) | XBB.1.5.110 | 2023-10-16 | 1.33514e-05 | USA/CO-CDPHE-41544968/2023|PP051833.1|2023-11-15 | BBBBBBBBBBBAAABBBB | (15, 3, 3) | 0.0196078 | 8 | 3 | PASS |
View Tree
|
| 72 | node_294005 | node_296498 | node_294004 | 6 | 9 | 9 | (12397,21302) | (21305,22930) | 23B (XBB.1.16) | XBB.1.16.6 | 23B (XBB.1.16) | FU.1 | 23B (XBB.1.16) | XBB.1.16.6 | 2023-11-03 | 1.33514e-05 | USA/2023CV3672/2023|PP073348.1|2023-12-18 | BBBBBBBAAABBBB | (11, 3, 3) | 0.032967 | 3 | 3 | cluster, |
View Tree
|
| 73 | node_395977 | node_395533 | node_394757 | 16296 | 19 | 4 | (16342,22317) | (23123,27431) | 22F (XBB) | XBB.2 | 22F (XBB) | XBB.2.6.1 | 22F (XBB) | XBB.1 | 2023-01-11 | 1.27729e-05 | USA/FL-CDC-QDX83399256/2023|OR440555.1|2023-07-31 | BBBAAAAB | (4, 4, 4) | 0.0714286 | 3 | 3 | PASS |
View Tree
|
| 74 | node_302741 | node_302740 | node_284649 | 20 | 21 | 9 | (11956,14016) | - | 23D (XBB.1.9) | FL.20.1 | 23D (XBB.1.9) | FL.20.1 | 23B (XBB.1.16) | XBB.1.16 | 2023-09-05 | 1.24574e-05 | GBR/SFK-USAFSAM-S22142/2023|PP317650.1|2023-12-26 | BBBBBAAAAAAAAAAAA | (5, 12, 12) | 0.000969619 | 5 | 5 | Too_many_mutations_near_INDELs, |
View Tree
|
| 75 | node_302741 | node_302740 | node_300781 | 20 | 21 | 4 | (11956,14016) | - | 23D (XBB.1.9) | FL.20.1 | 23D (XBB.1.9) | FL.20.1 | 23D (XBB.1.9) | XBB.1.9.1 | 2023-09-05 | 1.24574e-05 | GBR/SFK-USAFSAM-S22142/2023|PP317650.1|2023-12-26 | BBBBBAAAAAAAA | (5, 8, 8) | 0.00466201 | 5 | 5 | Too_many_mutations_near_INDELs, |
View Tree
|
| 76 | node_316438 | node_340929 | node_316433 | 12 | 5 | 28 | (25947,26907) | - | 23F (EG.5.1) | EG.5.1 | 23D (XBB.1.9) | XBB.1.9 | 23F (EG.5.1) | EG.5.1 | 2023-10-04 | 1.21593e-05 | USA/CA-CDPH-6000017485/2023|OR949029.1|2023-11-03 | BBBBBBBBBBBAAAAA | (11, 5, 5) | 0.00274725 | 5 | 5 | PASS |
View Tree
|
| 77 | node_394614 | node_340916 | node_394613 | 185 | 5 | 186 | (19554,22295) | - | 22F (XBB) | GA.4.1 | 23D (XBB.1.9) | XBB.1.9 | 22F (XBB) | GA.4 | 2023-07-04 | 1.19135e-05 | USA/FL-CDC-LC1064532/2023|OR681707.1|2023-10-02 | BBBBBBBBBBBBBBBBBBAAAABA | (19, 5, 4) | 0.0103049 | 6 | 4 | Too_many_mutations_near_INDELs, |
View Tree
|
| 78 | node_394614 | node_340916 | node_394613 | 185 | 5 | 186 | (19554,22295) | (23673,28173) | 22F (XBB) | GA.4.1 | 23D (XBB.1.9) | XBB.1.9 | 22F (XBB) | GA.4 | 2023-07-04 | 1.19135e-05 | USA/FL-CDC-LC1064532/2023|OR681707.1|2023-10-02 | BBBBBBBBBBBBBBBBBBAAAABA | (19, 5, 4) | 0.0103049 | 6 | 4 | Too_many_mutations_near_INDELs, |
View Tree
|
| 79 | node_394614 | node_340915 | node_394613 | 185 | 6 | 186 | (13627,22295) | - | 22F (XBB) | GA.4.1 | 23D (XBB.1.9) | XBB.1.9 | 22F (XBB) | GA.4 | 2023-07-04 | 1.19135e-05 | USA/FL-CDC-LC1064532/2023|OR681707.1|2023-10-02 | BBBBBBBBBBAAAA | (10, 4, 4) | 0.010989 | 6 | 4 | PASS |
View Tree
|
| 80 | node_329108 | node_568665 | node_328772 | 17 | 47 | 8484 | (29625,29761) | - | 23F (EG.5.1) | EG.5.1.3 | 22B (BA.5) | BE.1.1.1 | 23F (EG.5.1) | EG.5.1.3 | 2023-08-30 | 1.07884e-05 | USA/CA-LACPHL-AY04606/2023|PP150597.1|2023-12-18 | BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBAAA | (57, 3, 3) | 0.00169492 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 81 | node_857422 | node_301912 | node_857186 | 13 | 6 | 695 | (22317,22577) | (29510,29742) | 21M (Omicron) | XCU | 23D (XBB.1.9) | FL.23.2.1 | 21M (Omicron) | XBC | 2023-08-21 | 1.01328e-05 | USA/NY-PRL-231103_82G03/2023|OR797424.1|2023-11-03 | BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBAAAAAAAAAAAAAAAAAAAAAAAAB | (52, 24, 24) | 1.40671e-18 | 34 | 24 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump, |
View Tree
|
| 82 | node_339315 | node_303431 | node_339314 | 6 | 5 | 16 | (24754,26491) | (26497,27507) | 23F (EG.5.1) | HV.1 | 23D (XBB.1.9) | XBB.1.9.1 | 23F (EG.5.1) | HV.1 | 2023-11-06 | 9.53674e-06 | USA/MIS-RR055325651/2023|OR918114.1|2023-11-04 | BBBBBBBBBBBBBBBBBBBBBBBAAABB | (25, 3, 3) | 0.00793651 | 5 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 83 | node_282571 | node_284649 | node_302691 | 5 | 9 | 694 | (18703,22101) | (23986,29386) | 22F (XBB) | XBB.1 | 23B (XBB.1.16) | XBB.1.16 | 23D (XBB.1.9) | XBB.1.9.1 | 2023-10-30 | 9.53674e-06 | USA/IVY-G43R20V6/2023|OR871990.1|2023-11-02 | ABBBBAAAAB | (5, 5, 4) | 0.18254 | 11 | 4 | PASS |
View Tree
|
| 84 | node_282571 | node_291317 | node_302691 | 5 | 13 | 694 | (18703,20995) | (22995,28447) | 22F (XBB) | XBB.1 | 23B (XBB.1.16) | XBB.1.16.6 | 23D (XBB.1.9) | XBB.1.9.1 | 2023-10-30 | 9.53674e-06 | USA/IVY-G43R20V6/2023|OR871990.1|2023-11-02 | BABBBBBBBBBBBAAAABB | (14, 5, 4) | 0.0217578 | 11 | 4 | Alt, |
View Tree
|
| 85 | node_282571 | node_302691 | node_284649 | 5 | 694 | 9 | (5720,9391) | (18703,22101) | 22F (XBB) | XBB.1 | 23D (XBB.1.9) | XBB.1.9.1 | 23B (XBB.1.16) | XBB.1.16 | 2023-10-30 | 9.53674e-06 | USA/IVY-G43R20V6/2023|OR871990.1|2023-11-02 | BAAAABBBBA | (5, 5, 4) | 0.18254 | 11 | 4 | Alt, |
View Tree
|
| 86 | node_339315 | node_324379 | node_339314 | 6 | 5 | 16 | (25572,26491) | - | 23F (EG.5.1) | HV.1 | 23F (EG.5.1) | EG.5.1.1 | 23F (EG.5.1) | HV.1 | 2023-11-06 | 9.53674e-06 | USA/MIS-RR055325651/2023|OR918114.1|2023-11-04 | BBBBBBBBBBBAAA | (11, 3, 3) | 0.032967 | 5 | 3 | cluster, |
View Tree
|
| 87 | node_339315 | node_311347 | node_339314 | 6 | 4 | 16 | (22930,26491) | (26497,27507) | 23F (EG.5.1) | HV.1 | 23D (XBB.1.9) | FL.3.2 | 23F (EG.5.1) | HV.1 | 2023-11-06 | 9.53674e-06 | USA/MIS-RR055325651/2023|OR918114.1|2023-11-04 | BBBBBBBBBBBBBBBBBBAAABB | (20, 3, 3) | 0.0118577 | 5 | 3 | cluster, |
View Tree
|
| 88 | node_321356 | node_348571 | node_327033 | 20 | 5 | 313 | (22986,25572) | - | 23F (EG.5.1) | EG.5.1.1 | 23A (XBB.1.5) | JD.1.1.7 | 23H (HK.3) | HK.3 | 2023-10-06 | 9.05991e-06 | Wales/CLIMB-CM7YE3ZO/2023|OY757483.1|2023-10-23 | BBBBBBBBBBBBBBBBBAAAAAA | (17, 6, 6) | 0.000178311 | 4 | 3 | PASS |
View Tree
|
| 89 | node_321356 | node_347359 | node_327033 | 20 | 4825 | 313 | (22930,25572) | - | 23F (EG.5.1) | EG.5.1.1 | 23A (XBB.1.5) | JD.1 | 23H (HK.3) | HK.3 | 2023-10-06 | 9.05991e-06 | Wales/CLIMB-CM7YE3ZO/2023|OY757483.1|2023-10-23 | BBBBBBBBBBBBBBBBBBBAAAAAA | (19, 6, 6) | 0.000112931 | 4 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 90 | node_282011 | node_308110 | node_281931 | 19 | 9 | 795 | (24046,27915) | - | 22F (XBB) | XDE | 23D (XBB.1.9) | FL.1.5.1 | 22F (XBB) | GW.5 | 2023-08-27 | 8.34465e-06 | USA/NJ-CDC-VSX-A357385/2023|OR673138.1|2023-09-27 | BBBBBBBBBBBBBBBBBBBBBBAAAA | (22, 4, 4) | 0.00153846 | 5 | 4 | Too_many_mutations_near_INDELs, |
View Tree
|
| 91 | node_282011 | node_281870 | node_281931 | 19 | 4 | 795 | (24046,27915) | - | 22F (XBB) | XDE | 22F (XBB) | XBB.1.19 | 22F (XBB) | GW.5 | 2023-08-27 | 8.34465e-06 | USA/NJ-CDC-VSX-A357385/2023|OR673138.1|2023-09-27 | BBBBBBBBBAAAA | (9, 4, 4) | 0.013986 | 5 | 4 | Too_many_mutations_near_INDELs, |
View Tree
|
| 92 | node_354370 | node_284379 | node_354369 | 11 | 4 | 13 | (27059,28005) | - | 23G (XBB.1.5.70) | GK.2.1 | 22F (XBB) | FY.6_2935 | 23G (XBB.1.5.70) | GK.2.1 | 2023-09-28 | 7.15256e-06 | USA/NY-CDC-QDX90730205/2023|PP115343.1|2023-12-27 | BBBBBBBBBBBBBBBBBBBBBBBAAA | (23, 3, 3) | 0.00923077 | 4 | 3 | PASS |
View Tree
|
| 93 | node_348571 | node_348292 | node_324624 | 5 | 23 | 144 | (6896,9693) | (25572,26609) | 23A (XBB.1.5) | JD.1.1.7 | 23A (XBB.1.5) | JD.1.1 | 23F (EG.5.1) | HK.30 | 2023-10-29 | 6.19888e-06 | Switzerland/BE-IFIK-231023_os_18/2023|OY757147.1|2023-10-10 | BBBBAAAAAAAAAAAAAAAAAAAABBBBBBB | (11, 20, 20) | 1.41723e-07 | 11 | 10 | Too_many_mutations_near_INDELs, |
View Tree
|
| 94 | node_321360 | node_329828 | node_317968 | 15 | 5 | 31229 | (13627,22570) | - | 23F (EG.5.1) | EG.5.1.1 | 23F (EG.5.1) | EG.5.1.3 | 23F (EG.5.1) | EG.5.1.1 | 2023-09-07 | 5.66244e-06 | USA/CO-CDPHE-41420064/2023|OR840233.1|2023-10-04 | BBBBAAAA | (4, 4, 4) | 0.0714286 | 4 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 95 | node_321360 | node_329828 | node_324275 | 15 | 5 | 3 | (13627,22570) | - | 23F (EG.5.1) | EG.5.1.1 | 23F (EG.5.1) | EG.5.1.3 | 23F (EG.5.1) | EG.5.1.1 | 2023-09-07 | 5.66244e-06 | USA/CO-CDPHE-41420064/2023|OR840233.1|2023-10-04 | BBBBAAAA | (4, 4, 4) | 0.0714286 | 4 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
View Tree
|
| 96 | node_321360 | node_329828 | node_284649 | 15 | 5 | 9 | (13627,16878) | - | 23F (EG.5.1) | EG.5.1.1 | 23F (EG.5.1) | EG.5.1.3 | 23B (XBB.1.16) | XBB.1.16 | 2023-09-07 | 5.66244e-06 | USA/CO-CDPHE-41420064/2023|OR840233.1|2023-10-04 | BBBBAAAAAAAAAAAA | (4, 12, 12) | 0.00274725 | 4 | 3 | PASS |
View Tree
|
| 97 | node_320090 | node_319165 | node_320089 | 45 | 127 | 50 | (18492,22320) | - | 23F (EG.5.1) | EG.5.1.1 | 23F (EG.5.1) | HK.6 | 23F (EG.5.1) | EG.5.1.1 | 2023-08-10 | 5.27501e-06 | England/CLIMB-CM7YJXS3/2023|OY742219.1|2023-09-13 | BBBBBBAAA | (6, 3, 3) | 0.0833333 | 4 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
View Tree
|
| 98 | node_343249 | node_428479 | node_343118 | 82 | 273 | 21 | (22896,22917) | - | 22F (XBB) | XBB.1 | 23C (CH.1.1) | DV.7.1.2 | 22F (XBB) | XBB.1 | 2023-07-07 | 4.85778e-06 | England/CLIMB-CM7YFQDB/2023|OY753376.1|2023-10-10 | BBBBBBBBBBBBBBBBABBBBBBBBBABABBABBAAABAAAAAAAA | (31, 15, 10) | 6.40318e-05 | 17 | 10 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
View Tree
|
| 99 | node_290418 | node_282900 | node_290417 | 6 | 5 | 7 | (23123,24973) | - | 23B (XBB.1.16) | XBB.1.16.11 | 22F (XBB) | FY.5.2 | 23B (XBB.1.16) | XBB.1.16.11 | 2023-09-20 | 4.64916e-06 | USA/IL-RIPHL_160427_G/2023|OR733452.1|2023-09-29 | BBBBBBBBBBBBBBBBBAAAAAAAA | (17, 8, 8) | 1.66424e-05 | 8 | 8 | Too_many_mutations_near_INDELs, |
View Tree
|
| 100 | node_290418 | node_282900 | node_290403 | 6 | 5 | 113 | (23123,24973) | - | 23B (XBB.1.16) | XBB.1.16.11 | 22F (XBB) | FY.5.2 | 23B (XBB.1.16) | XBB.1.16.11 | 2023-09-20 | 4.64916e-06 | USA/IL-RIPHL_160427_G/2023|OR733452.1|2023-09-29 | BBBBBBBBBBBBBBBBBAAAAAAAAA | (17, 9, 9) | 5.76083e-06 | 8 | 8 | Too_many_mutations_near_INDELs, |
View Tree
|
| 101 | node_293163 | node_292936 | node_291457 | 8 | 12 | 9977 | (12775,21941) | (22927,27870) | 23B (XBB.1.16) | JF.1 | 23B (XBB.1.16) | JF.1.1 | 23B (XBB.1.16) | XBB.1.16.6 | 2023-09-11 | 4.41074e-06 | USA/CA-SEARCH-136445/2023|PP043020.1|2023-09-30 | BBBBBAAAAAB | (6, 5, 5) | 0.0151515 | 4 | 4 | Alt, |
View Tree
|
| 102 | node_293163 | node_292936 | node_291087 | 8 | 12 | 11257 | (12775,21941) | (23986,27870) | 23B (XBB.1.16) | JF.1 | 23B (XBB.1.16) | JF.1.1 | 23B (XBB.1.16) | XBB.1.16.6 | 2023-09-11 | 4.41074e-06 | USA/CA-SEARCH-136445/2023|PP043020.1|2023-09-30 | BBBBBAAAAAAB | (6, 6, 6) | 0.00757576 | 4 | 4 | Alt, |
View Tree
|
| 103 | node_293163 | node_292936 | node_292590 | 8 | 12 | 2136 | (12775,21941) | (22034,27870) | 23B (XBB.1.16) | JF.1 | 23B (XBB.1.16) | JF.1.1 | 23B (XBB.1.16) | JF.1 | 2023-09-11 | 4.41074e-06 | USA/CA-SEARCH-136445/2023|PP043020.1|2023-09-30 | BBBBBAAAAB | (6, 4, 4) | 0.0333333 | 4 | 4 | PASS |
View Tree
|
| 104 | node_324779 | node_336859 | node_317968 | 7 | 19 | 31229 | (13627,21941) | (22034,22917) | 23F (EG.5.1) | HK.19 | 23F (EG.5.1) | HV.1 | 23F (EG.5.1) | EG.5.1.1 | 2023-08-22 | 4.05312e-06 | USA/CA-SEARCH-139568/2023|PP351325.1|2023-12-04 | BBBAAAABB | (5, 4, 4) | 0.0476191 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 105 | node_324779 | node_331344 | node_317968 | 7 | 5 | 31229 | (13627,21941) | (22034,22570) | 23F (EG.5.1) | HK.19 | 23F (EG.5.1) | JG.3 | 23F (EG.5.1) | EG.5.1.1 | 2023-08-22 | 4.05312e-06 | USA/CA-SEARCH-139568/2023|PP351325.1|2023-12-04 | BBBBAAAABBBB | (8, 4, 4) | 0.0181818 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 106 | node_339787 | node_284649 | node_339786 | 90 | 9 | 92 | (22570,27507) | - | 23F (EG.5.1) | EG.5.1 | 23B (XBB.1.16) | XBB.1.16 | 23F (EG.5.1) | EG.5.1 | 2023-07-15 | 3.32296e-06 | USA/TN-SPHL-18857/2023|PP824876.1|2023-09-12 | BBBBBBBAAA | (7, 3, 3) | 0.0666667 | 3 | 3 | PASS |
View Tree
|
| 107 | node_339787 | node_328772 | node_284513 | 90 | 8484 | 47946 | (5720,9693) | (22930,27507) | 23F (EG.5.1) | EG.5.1 | 23F (EG.5.1) | EG.5.1.3 | 22F (XBB) | XBB.1 | 2023-07-15 | 3.32296e-06 | USA/TN-SPHL-18857/2023|PP824876.1|2023-09-12 | BBBAAAAAAAAABBBB | (7, 9, 9) | 0.000699301 | 3 | 3 | Alt, |
View Tree
|
| 108 | node_339787 | node_316619 | node_284513 | 90 | 4 | 47946 | (5720,9693) | (22930,23481) | 23F (EG.5.1) | EG.5.1 | 23F (EG.5.1) | EG.5.1 | 22F (XBB) | XBB.1 | 2023-07-15 | 3.32296e-06 | USA/TN-SPHL-18857/2023|PP824876.1|2023-09-12 | BBBAAAAAAAAABBBBB | (8, 9, 9) | 0.000370218 | 3 | 3 | Alt, |
View Tree
|
| 109 | node_339787 | node_329902 | node_284513 | 90 | 8 | 47946 | (5720,9693) | (22930,28447) | 23F (EG.5.1) | EG.5.1 | 23F (EG.5.1) | EG.5.1.3 | 22F (XBB) | XBB.1 | 2023-07-15 | 3.32296e-06 | USA/TN-SPHL-18857/2023|PP824876.1|2023-09-12 | BBBAAAAAAAAABBB | (6, 9, 9) | 0.0013986 | 3 | 3 | Alt, |
View Tree
|
| 110 | node_339787 | node_329687 | node_284649 | 90 | 8 | 9 | (9817,16878) | (22570,28447) | 23F (EG.5.1) | EG.5.1 | 23F (EG.5.1) | EG.5.1.3 | 23B (XBB.1.16) | XBB.1.16 | 2023-07-15 | 3.32296e-06 | USA/TN-SPHL-18857/2023|PP824876.1|2023-09-12 | BBBBBAAAAAAABBB | (8, 7, 7) | 0.0013986 | 3 | 3 | Alt, |
View Tree
|
| 111 | node_339787 | node_283457 | node_339783 | 90 | 4 | 98 | (22930,27507) | - | 23F (EG.5.1) | EG.5.1 | 22F (XBB) | FY.3 | 23F (EG.5.1) | EG.5.1 | 2023-07-15 | 3.32296e-06 | USA/TN-SPHL-18857/2023|PP824876.1|2023-09-12 | BBBBBBBBBBAAAA | (10, 4, 4) | 0.010989 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
View Tree
|
| 112 | node_339787 | node_283457 | node_339786 | 90 | 4 | 92 | (22930,27507) | - | 23F (EG.5.1) | EG.5.1 | 22F (XBB) | FY.3 | 23F (EG.5.1) | EG.5.1 | 2023-07-15 | 3.32296e-06 | USA/TN-SPHL-18857/2023|PP824876.1|2023-09-12 | BBBBBBBBBBAAA | (10, 3, 3) | 0.0384615 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
View Tree
|
| 113 | node_339787 | node_321360 | node_284649 | 90 | 15 | 9 | (13627,16878) | (22570,27507) | 23F (EG.5.1) | EG.5.1 | 23F (EG.5.1) | EG.5.1.1 | 23B (XBB.1.16) | XBB.1.16 | 2023-07-15 | 3.32296e-06 | USA/TN-SPHL-18857/2023|PP824876.1|2023-09-12 | BBBBAAAAAAABBBB | (8, 7, 7) | 0.0013986 | 3 | 3 | Alt, |
View Tree
|
| 114 | node_339787 | node_328772 | node_284649 | 90 | 8484 | 9 | (5720,16878) | (22570,27507) | 23F (EG.5.1) | EG.5.1 | 23F (EG.5.1) | EG.5.1.3 | 23B (XBB.1.16) | XBB.1.16 | 2023-07-15 | 3.32296e-06 | USA/TN-SPHL-18857/2023|PP824876.1|2023-09-12 | BBBAAAAAAABBBB | (7, 7, 7) | 0.002331 | 3 | 3 | Alt, |
View Tree
|
| 115 | node_339787 | node_316619 | node_284649 | 90 | 4 | 9 | (5720,16878) | (22570,23481) | 23F (EG.5.1) | EG.5.1 | 23F (EG.5.1) | EG.5.1 | 23B (XBB.1.16) | XBB.1.16 | 2023-07-15 | 3.32296e-06 | USA/TN-SPHL-18857/2023|PP824876.1|2023-09-12 | BBBAAAAAAABBBBB | (8, 7, 7) | 0.0013986 | 3 | 3 | Alt, |
View Tree
|
| 116 | node_339787 | node_284513 | node_339783 | 90 | 47946 | 98 | (22930,27507) | - | 23F (EG.5.1) | EG.5.1 | 22F (XBB) | XBB.1 | 23F (EG.5.1) | EG.5.1 | 2023-07-15 | 3.32296e-06 | USA/TN-SPHL-18857/2023|PP824876.1|2023-09-12 | BBBBBBBBBAAAA | (9, 4, 4) | 0.013986 | 3 | 3 | Alt, |
View Tree
|
| 117 | node_339787 | node_284649 | node_339783 | 90 | 9 | 98 | (22570,27507) | - | 23F (EG.5.1) | EG.5.1 | 23B (XBB.1.16) | XBB.1.16 | 23F (EG.5.1) | EG.5.1 | 2023-07-15 | 3.32296e-06 | USA/TN-SPHL-18857/2023|PP824876.1|2023-09-12 | BBBBBBBAAAA | (7, 4, 4) | 0.0242424 | 3 | 3 | Alt, |
View Tree
|
| 118 | node_333052 | node_314853 | node_333057 | 7 | 93 | 16 | (22480,22928) | - | 23F (EG.5.1) | EG.5.1.6 | 23D (XBB.1.9) | XBB.1.9.2 | 23F (EG.5.1) | EG.5.1.6 | 2023-08-15 | 3.09944e-06 | USA/2366644/2023|OR880320.1|2023-11-17 | BBBBBBBBAAA | (8, 3, 3) | 0.0545455 | 3 | 3 | Alt, |
View Tree
|
| 119 | node_333052 | node_299216 | node_335488 | 7 | 15 | 7 | (22480,22917) | (22930,27507) | 23F (EG.5.1) | EG.5.1.6 | 23B (XBB.1.16) | XBB.1.16 | 23F (EG.5.1) | HV.1 | 2023-08-15 | 3.09944e-06 | USA/2366644/2023|OR880320.1|2023-11-17 | BBBBBBBBBBBBBBBBAAABB | (18, 3, 3) | 0.0142857 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 120 | node_333052 | node_340214 | node_335488 | 7 | 3 | 7 | (22033,22917) | - | 23F (EG.5.1) | EG.5.1.6 | 23D (XBB.1.9) | XBB.1.9.2 | 23F (EG.5.1) | HV.1 | 2023-08-15 | 3.09944e-06 | USA/2366644/2023|OR880320.1|2023-11-17 | BBBBBBAAA | (6, 3, 3) | 0.0833333 | 3 | 3 | cluster, |
View Tree
|
| 121 | node_333052 | node_314853 | node_335470 | 7 | 93 | 17 | (22480,22917) | - | 23F (EG.5.1) | EG.5.1.6 | 23D (XBB.1.9) | XBB.1.9.2 | 23F (EG.5.1) | HV.1 | 2023-08-15 | 3.09944e-06 | USA/2366644/2023|OR880320.1|2023-11-17 | BBBBBBBBAAAA | (8, 4, 4) | 0.0181818 | 3 | 3 | Alt, |
View Tree
|
| 122 | node_333052 | node_340214 | node_335470 | 7 | 3 | 17 | (22033,22917) | - | 23F (EG.5.1) | EG.5.1.6 | 23D (XBB.1.9) | XBB.1.9.2 | 23F (EG.5.1) | HV.1 | 2023-08-15 | 3.09944e-06 | USA/2366644/2023|OR880320.1|2023-11-17 | BBBBBBAAAA | (6, 4, 4) | 0.0333333 | 3 | 3 | Alt, |
View Tree
|
| 123 | node_333052 | node_340214 | node_333057 | 7 | 3 | 16 | (22033,22928) | - | 23F (EG.5.1) | EG.5.1.6 | 23D (XBB.1.9) | XBB.1.9.2 | 23F (EG.5.1) | EG.5.1.6 | 2023-08-15 | 3.09944e-06 | USA/2366644/2023|OR880320.1|2023-11-17 | BBBBBBAAA | (6, 3, 3) | 0.0833333 | 3 | 3 | PASS |
View Tree
|
| 124 | node_340936 | node_353539 | node_340927 | 29 | 34 | 44 | (18492,22609) | - | 23D (XBB.1.9) | XBB.1.9 | 23G (XBB.1.5.70) | GK.1.1 | 23D (XBB.1.9) | XBB.1.9 | 2023-08-09 | 3.06964e-06 | England/CLIMB-CM7YJCS3/2023|OY847121.1|2023-11-18 | BBBBBBBBBBBBBAAAAAAAAA | (13, 9, 9) | 2.81452e-05 | 7 | 7 | Alt, |
View Tree
|
| 125 | node_340936 | node_353539 | node_340950 | 29 | 34 | 6 | (18492,22609) | - | 23D (XBB.1.9) | XBB.1.9 | 23G (XBB.1.5.70) | GK.1.1 | 23D (XBB.1.9) | XCY | 2023-08-09 | 3.06964e-06 | England/CLIMB-CM7YJCS3/2023|OY847121.1|2023-11-18 | BBBBBBBBBBBBBAAAAAAA | (13, 7, 7) | 0.000180599 | 7 | 7 | PASS |
View Tree
|
| 126 | node_340936 | node_353539 | node_300781 | 29 | 34 | 4 | (18492,22609) | - | 23D (XBB.1.9) | XBB.1.9 | 23G (XBB.1.5.70) | GK.1.1 | 23D (XBB.1.9) | XBB.1.9.1 | 2023-08-09 | 3.06964e-06 | England/CLIMB-CM7YJCS3/2023|OY847121.1|2023-11-18 | BBBBBBBBBBBBBAAAAAAAAAAAAAA | (13, 14, 14) | 6.97966e-07 | 7 | 7 | Too_many_mutations_near_INDELs, |
View Tree
|
| 127 | node_331775 | node_323653 | node_331769 | 12 | 7 | 13 | (28472,29545) | - | 23F (EG.5.1) | EG.5.1.4 | 23F (EG.5.1) | HK.16 | 23F (EG.5.1) | EG.5.1.4 | 2023-09-22 | 2.86102e-06 | England/CLIMB-CM7YKR7A/2023|OY744181.1|2023-09-27 | BBBBBBBBBBBBBBAAA | (14, 3, 3) | 0.0220588 | 3 | 3 | PASS |
View Tree
|
| 128 | node_331775 | node_293049 | node_331769 | 12 | 9 | 13 | (29386,29545) | - | 23F (EG.5.1) | EG.5.1.4 | 23B (XBB.1.16) | JF.1 | 23F (EG.5.1) | EG.5.1.4 | 2023-09-22 | 2.86102e-06 | England/CLIMB-CM7YKR7A/2023|OY744181.1|2023-09-27 | BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBAAA | (33, 3, 3) | 0.0047619 | 3 | 3 | Alt, |
View Tree
|
| 129 | node_331775 | node_227984 | node_331769 | 12 | 4 | 13 | (28297,29545) | - | 23F (EG.5.1) | EG.5.1.4 | 21L (BA.2) | miscBA2BA1PostSpike | 23F (EG.5.1) | EG.5.1.4 | 2023-09-22 | 2.86102e-06 | England/CLIMB-CM7YKR7A/2023|OY744181.1|2023-09-27 | BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBAAA | (51, 3, 3) | 0.00209644 | 3 | 3 | Alt, |
View Tree
|
| 130 | node_331775 | node_300218 | node_331769 | 12 | 20 | 13 | (27507,29545) | - | 23F (EG.5.1) | EG.5.1.4 | 22F (XBB) | XBB.1 | 23F (EG.5.1) | EG.5.1.4 | 2023-09-22 | 2.86102e-06 | England/CLIMB-CM7YKR7A/2023|OY744181.1|2023-09-27 | BBBBBBBBBBBBBBBBBBBBBBBAAA | (23, 3, 3) | 0.00923077 | 3 | 3 | Alt, |
View Tree
|
| 131 | node_331775 | node_399457 | node_331769 | 12 | 5 | 13 | (28297,29545) | - | 23F (EG.5.1) | EG.5.1.4 | 23E (XBB.2.3) | GS.4.1 | 23F (EG.5.1) | EG.5.1.4 | 2023-09-22 | 2.86102e-06 | England/CLIMB-CM7YKR7A/2023|OY744181.1|2023-09-27 | BBBBBBBBBBBBBBBBBBBBBBBBBBBBBAAA | (29, 3, 3) | 0.00604839 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 132 | node_323653 | node_323641 | node_399449 | 7 | 51 | 5 | (6541,9693) | (28472,29625) | 23F (EG.5.1) | HK.16 | 23F (EG.5.1) | HK.16 | 23E (XBB.2.3) | GS.4.1 | 2023-10-02 | 2.6226e-06 | England/CLIMB-CM7Y8WQ8/2023|OY891241.1|2023-10-14 | BBBBBBAAAAAAAAAAAAAAAAAAAAAAAAAAAABB | (8, 28, 28) | 2.97419e-07 | 10 | 8 | Alt, |
View Tree
|
| 133 | node_323653 | node_323641 | node_399123 | 7 | 51 | 1586 | (6541,9693) | (28472,29625) | 23F (EG.5.1) | HK.16 | 23F (EG.5.1) | HK.16 | 23E (XBB.2.3) | XBB.2.3.11 | 2023-10-02 | 2.6226e-06 | England/CLIMB-CM7Y8WQ8/2023|OY891241.1|2023-10-14 | BBBBBBAAAAAAAAAAAAAAAAAAAAAAAABB | (8, 24, 24) | 8.55652e-07 | 10 | 8 | Alt, |
View Tree
|
| 134 | node_323653 | node_323641 | node_401917 | 7 | 51 | 28 | (6541,9693) | (28472,29625) | 23F (EG.5.1) | HK.16 | 23F (EG.5.1) | HK.16 | 23E (XBB.2.3) | XBB.2.3 | 2023-10-02 | 2.6226e-06 | England/CLIMB-CM7Y8WQ8/2023|OY891241.1|2023-10-14 | BBBBBAAAAAAAAAAAAAAAAAAAAAABBB | (8, 22, 22) | 1.53769e-06 | 10 | 8 | PASS |
View Tree
|
| 135 | node_399456 | node_399306 | node_303519 | 19 | 475 | 3 | (6536,11956) | - | 23E (XBB.2.3) | GS.4.1 | 23E (XBB.2.3) | GS.4.1 | 23D (XBB.1.9) | XBB.1.9.1 | 2023-08-14 | 2.5928e-06 | USA/WA-CDC-UW23090883129/2023|OR578475.1|2023-09-08 | BBBBAAAAAAAAAAAAAAAA | (4, 16, 16) | 0.00103199 | 4 | 4 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
View Tree
|
| 136 | node_399456 | node_399306 | node_401981 | 19 | 475 | 31 | (6536,11750) | - | 23E (XBB.2.3) | GS.4.1 | 23E (XBB.2.3) | GS.4.1 | 23E (XBB.2.3) | XBB.2.3 | 2023-08-14 | 2.5928e-06 | USA/WA-CDC-UW23090883129/2023|OR578475.1|2023-09-08 | BBBBAAAAAAAA | (4, 8, 8) | 0.010101 | 4 | 4 | PASS |
View Tree
|
| 137 | node_399456 | node_399306 | node_282711 | 19 | 475 | 9 | (6536,14268) | - | 23E (XBB.2.3) | GS.4.1 | 23E (XBB.2.3) | GS.4.1 | 22F (XBB) | XBB.1.22 | 2023-08-14 | 2.5928e-06 | USA/WA-CDC-UW23090883129/2023|OR578475.1|2023-09-08 | BBBBAAAAAAAAAAAAAAAA | (4, 16, 16) | 0.00103199 | 4 | 4 | Alt, |
View Tree
|
| 138 | node_399456 | node_399306 | node_348571 | 19 | 475 | 5 | (6536,14085) | - | 23E (XBB.2.3) | GS.4.1 | 23E (XBB.2.3) | GS.4.1 | 23A (XBB.1.5) | JD.1.1.7 | 2023-08-14 | 2.5928e-06 | USA/WA-CDC-UW23090883129/2023|OR578475.1|2023-09-08 | BBBBAAAAAAAAAAAAAAAAAAAAAAA | (4, 23, 23) | 0.0002849 | 4 | 4 | Alt, |
View Tree
|
| 139 | node_339139 | node_314606 | node_334649 | 14 | 3 | 4 | (22930,27382) | (27384,28928) | 23F (EG.5.1) | HV.1 | 23D (XBB.1.9) | XBB.1.9.2 | 23F (EG.5.1) | HV.1 | 2023-09-09 | 2.5034e-06 | USA/MD-CDC-LC1057959/2023|OR569631.1|2023-09-11 | BBBBBBBBBBAAABB | (12, 3, 3) | 0.0285714 | 3 | 3 | cluster, |
View Tree
|
| 140 | node_339139 | node_314606 | node_333061 | 14 | 3 | 10 | (22930,25572) | (27384,28928) | 23F (EG.5.1) | HV.1 | 23D (XBB.1.9) | XBB.1.9.2 | 23F (EG.5.1) | EG.5.1.6 | 2023-09-09 | 2.5034e-06 | USA/MD-CDC-LC1057959/2023|OR569631.1|2023-09-11 | BBBBBBBBBBAAAABB | (12, 4, 4) | 0.00714286 | 3 | 3 | PASS |
View Tree
|
| 141 | node_293908 | node_284805 | node_293399 | 10 | 11 | 5 | (12397,18029) | (21296,22930) | 23B (XBB.1.16) | XBB.1.16.6 | 23B (XBB.1.16) | XBB.1.16 | 23B (XBB.1.16) | XBB.1.16.6 | 2023-09-03 | 2.38419e-06 | USA/FL-CDC-VSX-A357206/2023|OR632854.1|2023-09-20 | BBBAAAABBB | (6, 4, 4) | 0.0333333 | 3 | 3 | Alt, |
View Tree
|
| 142 | node_323479 | node_317070 | node_323478 | 5 | 11 | 11 | (21020,22033) | - | 23F (EG.5.1) | EG.5.1.1 | 23F (EG.5.1) | EG.5.1 | 23F (EG.5.1) | EG.5.1.1 | 2023-10-08 | 2.38419e-06 | USA/CA-CDC-QDX86758158/2023|OR816761.1|2023-10-23 | BBBBBBBBBBAAA | (10, 3, 3) | 0.0384615 | 4 | 3 | Alt, |
View Tree
|
| 143 | node_323479 | node_332654 | node_323478 | 5 | 3 | 11 | (17004,22033) | (25572,28236) | 23F (EG.5.1) | EG.5.1.1 | 23F (EG.5.1) | EG.5.1.6 | 23F (EG.5.1) | EG.5.1.1 | 2023-10-08 | 2.38419e-06 | USA/CA-CDC-QDX86758158/2023|OR816761.1|2023-10-23 | BBBBBBAAAB | (7, 3, 3) | 0.0666667 | 4 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 144 | node_323479 | node_333162 | node_323478 | 5 | 21386 | 11 | (17004,22033) | - | 23F (EG.5.1) | EG.5.1.1 | 23F (EG.5.1) | HV.1 | 23F (EG.5.1) | EG.5.1.1 | 2023-10-08 | 2.38419e-06 | USA/CA-CDC-QDX86758158/2023|OR816761.1|2023-10-23 | BBBBBBAAA | (6, 3, 3) | 0.0833333 | 4 | 3 | Alt, |
View Tree
|
| 145 | node_293908 | node_284805 | node_293834 | 10 | 11 | 513 | (12397,21294) | (21296,22930) | 23B (XBB.1.16) | XBB.1.16.6 | 23B (XBB.1.16) | XBB.1.16 | 23B (XBB.1.16) | XBB.1.16.6 | 2023-09-03 | 2.38419e-06 | USA/FL-CDC-VSX-A357206/2023|OR632854.1|2023-09-20 | BBBAAABBB | (6, 3, 3) | 0.0833333 | 3 | 3 | cluster, |
View Tree
|
| 146 | node_323479 | node_339131 | node_323478 | 5 | 3 | 11 | (17004,22033) | - | 23F (EG.5.1) | EG.5.1.1 | 23F (EG.5.1) | HV.1 | 23F (EG.5.1) | EG.5.1.1 | 2023-10-08 | 2.38419e-06 | USA/CA-CDC-QDX86758158/2023|OR816761.1|2023-10-23 | BBBBBAAA | (5, 3, 3) | 0.107143 | 4 | 3 | PASS |
View Tree
|
| 147 | node_293908 | node_284805 | node_292432 | 10 | 11 | 6 | (12397,21294) | (22570,22930) | 23B (XBB.1.16) | XBB.1.16.6 | 23B (XBB.1.16) | XBB.1.16 | 23B (XBB.1.16) | XBB.1.16.6 | 2023-09-03 | 2.38419e-06 | USA/FL-CDC-VSX-A357206/2023|OR632854.1|2023-09-20 | BBBAAAABBB | (6, 4, 4) | 0.0333333 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 148 | node_293908 | node_226882 | node_293834 | 10 | 7 | 513 | (19518,21294) | (21296,21810) | 23B (XBB.1.16) | XBB.1.16.6 | 21L (BA.2) | BA.2 | 23B (XBB.1.16) | XBB.1.16.6 | 2023-09-03 | 2.38419e-06 | USA/FL-CDC-VSX-A357206/2023|OR632854.1|2023-09-20 | BBBBBBBBBBBBBBBBBBAAABBBBBBBBBBBBBBBBBBBBBBBBBBB | (45, 3, 3) | 0.00265957 | 3 | 3 | cluster, |
View Tree
|
| 149 | node_323479 | node_332956 | node_323478 | 5 | 20 | 11 | (21772,22033) | - | 23F (EG.5.1) | EG.5.1.1 | 23F (EG.5.1) | EG.5.1.6 | 23F (EG.5.1) | EG.5.1.1 | 2023-10-08 | 2.38419e-06 | USA/CA-CDC-QDX86758158/2023|OR816761.1|2023-10-23 | BBBBBBBAAA | (7, 3, 3) | 0.0666667 | 4 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 150 | node_293908 | node_293399 | node_300228 | 10 | 5 | 4 | (21296,22320) | - | 23B (XBB.1.16) | XBB.1.16.6 | 23B (XBB.1.16) | XBB.1.16.6 | 22F (XBB) | XBB.1 | 2023-09-03 | 2.38419e-06 | USA/FL-CDC-VSX-A357206/2023|OR632854.1|2023-09-20 | BBBBAAAAAAAAAAA | (4, 11, 11) | 0.003663 | 3 | 3 | PASS |
View Tree
|
| 151 | node_321484 | node_314896 | node_321475 | 8 | 1597 | 35 | (22930,25572) | - | 23F (EG.5.1) | EG.5.1.1 | 23D (XBB.1.9) | EG.6 | 23F (EG.5.1) | EG.5.1.1 | 2023-09-03 | 2.32458e-06 | Denmark/DCGC-659214/2023|OY779225.1|2023-09-04 | BBBBBBBBBBBBBAAA | (13, 3, 3) | 0.025 | 3 | 3 | PASS |
View Tree
|
| 152 | node_400307 | node_301093 | node_400186 | 119 | 3 | 459 | (17674,21294) | (21296,22317) | 23E (XBB.2.3) | GE.1.4 | 23D (XBB.1.9) | FL.13.1 | 23E (XBB.2.3) | GE.1.4 | 2023-06-17 | 2.27615e-06 | England/CLIMB-CM7Y8AMF/2023|OY732676.1|2023-08-23 | BBBBBBBBBBBBAAABBBBBBBBB | (21, 3, 3) | 0.0108696 | 4 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
View Tree
|
| 153 | node_400307 | node_300228 | node_400186 | 119 | 4 | 459 | (18703,21294) | (21296,22317) | 23E (XBB.2.3) | GE.1.4 | 22F (XBB) | XBB.1 | 23E (XBB.2.3) | GE.1.4 | 2023-06-17 | 2.27615e-06 | England/CLIMB-CM7Y8AMF/2023|OY732676.1|2023-08-23 | BBBBBBBBBBBBAAAB | (13, 3, 3) | 0.025 | 4 | 3 | cluster, |
View Tree
|
| 154 | node_400307 | node_226882 | node_400186 | 119 | 7 | 459 | (19518,21294) | (21296,21810) | 23E (XBB.2.3) | GE.1.4 | 21L (BA.2) | BA.2 | 23E (XBB.2.3) | GE.1.4 | 2023-06-17 | 2.27615e-06 | England/CLIMB-CM7Y8AMF/2023|OY732676.1|2023-08-23 | BBBBBBBBBBBBBBBAAABBBBBBBBBBBBBBBBBBBBBB | (37, 3, 3) | 0.00384615 | 4 | 3 | cluster, |
View Tree
|
| 155 | node_400307 | node_284805 | node_400186 | 119 | 11 | 459 | (18703,21294) | (21296,22101) | 23E (XBB.2.3) | GE.1.4 | 23B (XBB.1.16) | XBB.1.16 | 23E (XBB.2.3) | GE.1.4 | 2023-06-17 | 2.27615e-06 | England/CLIMB-CM7Y8AMF/2023|OY732676.1|2023-08-23 | BBBBBBBBBBBBAAABBBBBBBBBB | (22, 3, 3) | 0.01 | 4 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 156 | node_310697 | node_299184 | node_310597 | 24 | 3 | 7 | (18703,21371) | (23123,23664) | 23D (XBB.1.9) | FL.1.8 | 23B (XBB.1.16) | XBB.1.16 | 23D (XBB.1.9) | FL.1.1 | 2023-07-18 | 2.23517e-06 | USA/FL-CDC-QDX84610906/2023|OR564887.1|2023-08-30 | BBBBBBBBBAAABBBBBB | (15, 3, 3) | 0.0196078 | 8 | 3 | Alt, |
View Tree
|
| 157 | node_310697 | node_300205 | node_310597 | 24 | 8 | 7 | (12970,21371) | (23123,23664) | 23D (XBB.1.9) | FL.1.8 | 22F (XBB) | XBB.1 | 23D (XBB.1.9) | FL.1.1 | 2023-07-18 | 2.23517e-06 | USA/FL-CDC-QDX84610906/2023|OR564887.1|2023-08-30 | BBBBBAAABBB | (8, 3, 3) | 0.0545455 | 8 | 3 | PASS |
View Tree
|
| 158 | node_339985 | node_226519 | node_339952 | 23 | 5 | 76 | (28297,29485) | - | 23F (EG.5.1) | EG.5.1 | 21L (BA.2) | BA.2 | 23F (EG.5.1) | EG.5.1 | 2023-08-03 | 2.19047e-06 | USA/WV137721/2023|OR641731.1|2023-08-30 | BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBAAA | (43, 3, 3) | 0.00289855 | 3 | 3 | Alt, |
View Tree
|
| 159 | node_339985 | node_303422 | node_339952 | 23 | 4 | 76 | (27507,29485) | - | 23F (EG.5.1) | EG.5.1 | 23D (XBB.1.9) | XBB.1.9.1 | 23F (EG.5.1) | EG.5.1 | 2023-08-03 | 2.19047e-06 | USA/WV137721/2023|OR641731.1|2023-08-30 | BBBBBBBBBBBBBBAAA | (14, 3, 3) | 0.0220588 | 3 | 3 | PASS |
View Tree
|
| 160 | node_352992 | node_229011 | node_354296 | 135 | 4 | 426 | (405,1973) | (12467,15738) | 23A (XBB.1.5) | XBB.1.5_17124 | 21L (BA.2) | BA.2 | 23G (XBB.1.5.70) | GK.2.1 | 2023-06-11 | 2.11969e-06 | Denmark/DCGC-662340/2023|OY779297.1|2023-10-09 | BAAAAAAABBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB | (38, 7, 7) | 8.59417e-07 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 161 | node_352992 | node_354296 | node_281796 | 135 | 426 | 390342 | (12467,15755) | - | 23A (XBB.1.5) | XBB.1.5_17124 | 23G (XBB.1.5.70) | GK.2.1 | 21L (BA.2) | BA.2.10.1 | 2023-06-11 | 2.11969e-06 | Denmark/DCGC-662340/2023|OY779297.1|2023-10-09 | BBBBBBBAAAAAAAAAAAAAAAAAAAAAAAAAAA | (7, 27, 27) | 1.4871e-06 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 162 | node_352992 | node_225557 | node_354296 | 135 | 201 | 426 | (405,1973) | (12467,15451) | 23A (XBB.1.5) | XBB.1.5_17124 | 21L (BA.2) | BA.2 | 23G (XBB.1.5.70) | GK.2.1 | 2023-06-11 | 2.11969e-06 | Denmark/DCGC-662340/2023|OY779297.1|2023-10-09 | BAAAAAAABBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB | (37, 7, 7) | 9.91635e-07 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 163 | node_352992 | node_354296 | node_352988 | 135 | 426 | 5230 | (12467,15755) | - | 23A (XBB.1.5) | XBB.1.5_17124 | 23G (XBB.1.5.70) | GK.2.1 | 23A (XBB.1.5) | XBB.1.5_17124 | 2023-06-11 | 2.11969e-06 | Denmark/DCGC-662340/2023|OY779297.1|2023-10-09 | BBBBBBBAAAAAAA | (7, 7, 7) | 0.002331 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 164 | node_340928 | node_353073 | node_300781 | 15 | 590 | 4 | (21718,22624) | - | 23D (XBB.1.9) | XBB.1.9 | 23G (XBB.1.5.70) | XCH | 23D (XBB.1.9) | XBB.1.9.1 | 2023-07-02 | 1.72853e-06 | Northern_Ireland/CLIMB-CM7YE9RX/2023|OY932664.1|2023-11-06 | BBBBBBBBBBBBBBBAAAAAAA | (15, 7, 7) | 9.38174e-05 | 3 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 165 | node_340928 | node_353073 | node_340950 | 15 | 590 | 6 | (21718,23673) | - | 23D (XBB.1.9) | XBB.1.9 | 23G (XBB.1.5.70) | XCH | 23D (XBB.1.9) | XCY | 2023-07-02 | 1.72853e-06 | Northern_Ireland/CLIMB-CM7YE9RX/2023|OY932664.1|2023-11-06 | BBBBBBBBBBBBBBBAAAA | (15, 4, 4) | 0.00412797 | 3 | 3 | PASS |
View Tree
|
| 166 | node_332005 | node_331608 | node_287762 | 11 | 1487 | 5 | (5720,9693) | - | 23F (EG.5.1) | EG.5.1.4 | 23F (EG.5.1) | EG.5.1.4 | 23B (XBB.1.16) | XBB.1.16 | 2023-08-13 | 1.68383e-06 | USA/NY-CDC-QDX84735250/2023|OR565058.1|2023-09-01 | BBBAAAAAAAAAAAAAAAAAAAAA | (3, 21, 21) | 0.00197628 | 4 | 3 | PASS |
View Tree
|
| 167 | node_332005 | node_242403 | node_331608 | 11 | 11 | 1487 | (405,2334) | (5720,9693) | 23F (EG.5.1) | EG.5.1.4 | 21L (BA.2) | BA.2 | 23F (EG.5.1) | EG.5.1.4 | 2023-08-13 | 1.68383e-06 | USA/NY-CDC-QDX84735250/2023|OR565058.1|2023-09-01 | BAAABBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB | (41, 3, 3) | 0.00317125 | 4 | 3 | Too_many_mutations_near_INDELs, |
View Tree
|
| 168 | node_443265 | node_428344 | node_340950 | 127 | 4 | 6 | (15026,15738) | (25721,27915) | 21L (BA.2) | BA.2 | 23C (CH.1.1) | DV.7.1.4 | 23D (XBB.1.9) | XCY | 2023-04-09 | 1.64658e-06 | USA/IL-CDC-QDX86658598/2023|OR816653.1|2023-10-20 | BBBBBBBBBBBBBBBBBABAAAAAABAAAAAAAAAAAAAAAAAAAAAAAAAABB | (21, 33, 31) | 5.30306e-11 | 13 | 11 | Too_many_mutations_near_INDELs, |
View Tree
|
| 169 | node_443265 | node_428326 | node_340950 | 127 | 1042 | 6 | (12444,12789) | (25721,25959) | 21L (BA.2) | BA.2 | 23C (CH.1.1) | DV.7.1 | 23D (XBB.1.9) | XCY | 2023-04-09 | 1.64658e-06 | USA/IL-CDC-QDX86658598/2023|OR816653.1|2023-10-20 | BBBBBBBBBBBBBBBABAAAAAABAAAAAAAAAAAAAAAAAAAAAAAAAABB | (19, 33, 31) | 3.00994e-10 | 13 | 11 | Too_many_mutations_near_INDELs, |
View Tree
|
| 170 | node_443265 | node_428326 | node_340950 | 127 | 1042 | 6 | (15026,15738) | (25721,25959) | 21L (BA.2) | BA.2 | 23C (CH.1.1) | DV.7.1 | 23D (XBB.1.9) | XCY | 2023-04-09 | 1.64658e-06 | USA/IL-CDC-QDX86658598/2023|OR816653.1|2023-10-20 | BBBBBBBBBBBBBBBABAAAAAABAAAAAAAAAAAAAAAAAAAAAAAAAABB | (19, 33, 31) | 3.00994e-10 | 13 | 11 | Too_many_mutations_near_INDELs, |
View Tree
|
| 171 | node_443265 | node_428456 | node_340950 | 127 | 4 | 6 | (15026,15738) | (25721,27915) | 21L (BA.2) | BA.2 | 23C (CH.1.1) | DV.7.1 | 23D (XBB.1.9) | XCY | 2023-04-09 | 1.64658e-06 | USA/IL-CDC-QDX86658598/2023|OR816653.1|2023-10-20 | BBBBBBBBBBBBBBBBABAAAAAABAAAAAAAAAAAAAAAAAAAAAAAAAAB | (19, 33, 31) | 3.00994e-10 | 13 | 11 | Too_many_mutations_near_INDELs, |