Full Tree, Last Updated: September 9, 2023
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| Row | Recombinant Node ID | Donor Node ID | Acceptor Node ID | Breakpoint 1 Interval | Breakpoint 2 Interval | Recombinant Clade | Recombinant Lineage | Donor Clade | Donor Lineage | Acceptor Clade | Acceptor Lineage | Chronumental-inferred origin date | Recombinant Ranking Score | Representative Descendant | Informative Site Sequence | 3SEQ (M, N, K) | 3SEQ P-Value | Original Parsimony Score | Parsimony Score Improvement | Quality Control (QC) Flags | Click to View |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | node_986015 | node_1088071 | node_1056417 | (22331,22577) | - | 22F (Omicron) | XBB | 22D (Omicron) | BY.1 | 21L (Omicron) | XBB_dropout | 2022-11-15 | 47.3988 | England/PHEC-YYEMHG4/2023|2023-03-12 | BBBBBBBBBBBBBBBBBBBABAAAAAAAA | (20, 9, 8) | 5.6016e-05 | 4 | 4 | Too_many_mutations_near_INDELs, |
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| 1 | node_986015 | node_1088071 | node_1056417 | (22331,22577) | (23599,27915) | 22F (Omicron) | XBB | 22D (Omicron) | BY.1 | 21L (Omicron) | XBB_dropout | 2022-11-15 | 47.3988 | England/PHEC-YYEMHG4/2023|2023-03-12 | BBBBBBBBBBBBBBBBBBBABAAAAAAAA | (20, 9, 8) | 5.6016e-05 | 4 | 4 | Too_many_mutations_near_INDELs, |
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| 2 | node_986015 | node_1056423 | node_986014 | (19326,21810) | (22895,22942) | 22F (Omicron) | XBB | 21L (Omicron) | BJ.1 | 21L (Omicron) | XBB_dropout | 2022-11-15 | 47.3988 | England/PHEC-YYEMHG4/2023|2023-03-12 | BAAAABBBBBBBBBBBBBB | (15, 4, 4) | 0.00412797 | 4 | 4 | Too_many_mutations_near_INDELs, |
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| 3 | node_986015 | node_1056423 | node_986013 | (19326,21810) | (22896,22942) | 22F (Omicron) | XBB | 21L (Omicron) | BJ.1 | 21L (Omicron) | XBB_dropout | 2022-11-15 | 47.3988 | England/PHEC-YYEMHG4/2023|2023-03-12 | BAAAAABBBBBBBBBBBBBB | (15, 5, 5) | 0.00103199 | 4 | 4 | Too_many_mutations_near_INDELs, |
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| 4 | node_1099578 | node_1052259 | node_1141112 | (22893,22895) | (23948,25416) | 21L (Omicron) | BA.2.86 | 23A (Omicron) | XBB.1.5 | 21L (Omicron) | BA.2 | 2023-07-08 | 9.625 | England/CLIMB-CM7YREUP/2023|2023-08-26 | BBBBBBBBBBBBBBABBBAAAAAABABBBB | (22, 8, 6) | 0.00145825 | 47 | 5 | Alt, |
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| 5 | node_1099578 | node_1066769 | node_1141112 | (22896,22898) | (25207,25810) | 21L (Omicron) | BA.2.86 | 21L (Omicron) | CM.8.1 | 21L (Omicron) | BA.2 | 2023-07-08 | 9.625 | England/CLIMB-CM7YREUP/2023|2023-08-26 | BBBBBBBBBBBBBBBBBABBAAAAAABBB | (22, 7, 6) | 0.000395315 | 47 | 5 | PASS |
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| 6 | node_1099578 | node_986099 | node_1141112 | (22770,22882) | (25207,25416) | 21L (Omicron) | BA.2.86 | 22F (Omicron) | XBB.1.19.1 | 21L (Omicron) | BA.2 | 2023-07-08 | 9.625 | England/CLIMB-CM7YREUP/2023|2023-08-26 | BBBBBBBBBBBBBBBBBABBAAAAABAABBB | (23, 8, 6) | 0.00121426 | 47 | 5 | Too_many_mutations_near_INDELs, |
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| 7 | node_1099578 | node_986099 | node_1141112 | (22770,22882) | (23854,25150) | 21L (Omicron) | BA.2.86 | 22F (Omicron) | XBB.1.19.1 | 21L (Omicron) | BA.2 | 2023-07-08 | 9.625 | England/CLIMB-CM7YREUP/2023|2023-08-26 | BBBBBBBBBBBBBBBBBABBAAAAABAABBB | (23, 8, 6) | 0.00121426 | 47 | 5 | Too_many_mutations_near_INDELs, |
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| 8 | node_1099578 | node_986099 | node_1141112 | (22664,22688) | (25207,25416) | 21L (Omicron) | BA.2.86 | 22F (Omicron) | XBB.1.19.1 | 21L (Omicron) | BA.2 | 2023-07-08 | 9.625 | England/CLIMB-CM7YREUP/2023|2023-08-26 | BBBBBBBBBBBBBBBBBABBAAAAABAABBB | (23, 8, 6) | 0.00121426 | 47 | 5 | Too_many_mutations_near_INDELs, |
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| 9 | node_1099578 | node_986099 | node_1141112 | (22664,22688) | (23854,25150) | 21L (Omicron) | BA.2.86 | 22F (Omicron) | XBB.1.19.1 | 21L (Omicron) | BA.2 | 2023-07-08 | 9.625 | England/CLIMB-CM7YREUP/2023|2023-08-26 | BBBBBBBBBBBBBBBBBABBAAAAABAABBB | (23, 8, 6) | 0.00121426 | 47 | 5 | Too_many_mutations_near_INDELs, |
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| 10 | node_1099578 | node_1192350 | node_1070148 | (22916,22917) | (26681,26833) | 21L (Omicron) | BA.2.86 | 22E (Omicron) | BQ.1.1.8 | 21L (Omicron) | BA.2 | 2023-07-08 | 9.625 | England/CLIMB-CM7YREUP/2023|2023-08-26 | BBBBBBABBBBBBBBBBBAAAAABBBBBBBBB | (26, 6, 5) | 0.00089054 | 47 | 5 | Too_many_mutations_near_INDELs, |
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| 11 | node_1099578 | node_1192350 | node_1070148 | (22910,22910) | (26681,26833) | 21L (Omicron) | BA.2.86 | 22E (Omicron) | BQ.1.1.8 | 21L (Omicron) | BA.2 | 2023-07-08 | 9.625 | England/CLIMB-CM7YREUP/2023|2023-08-26 | BBBBBBABBBBBBBBBBBAAAAABBBBBBBBB | (26, 6, 5) | 0.00089054 | 47 | 5 | Too_many_mutations_near_INDELs, |
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| 12 | node_1099578 | node_1066769 | node_1070148 | (22895,22910) | (25584,25810) | 21L (Omicron) | BA.2.86 | 21L (Omicron) | CM.8.1 | 21L (Omicron) | BA.2 | 2023-07-08 | 9.625 | England/CLIMB-CM7YREUP/2023|2023-08-26 | BBBBBBBBBBBBBBBBBABBBAAAAABB | (22, 6, 5) | 0.00157934 | 47 | 5 | Too_many_mutations_near_INDELs, |
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| 13 | node_1099578 | node_1183037 | node_1070148 | (22916,22917) | (26833,26858) | 21L (Omicron) | BA.2.86 | 22E (Omicron) | BQ.1.32 | 21L (Omicron) | BA.2 | 2023-07-08 | 9.625 | England/CLIMB-CM7YREUP/2023|2023-08-26 | BBBABBBBBBBBBBAAAAABBBBBBBBB | (22, 6, 5) | 0.00157934 | 47 | 5 | Too_many_mutations_near_INDELs, |
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| 14 | node_1099578 | node_1183057 | node_1070148 | (22910,22910) | (26858,27259) | 21L (Omicron) | BA.2.86 | 22E (Omicron) | BQ.1 | 21L (Omicron) | BA.2 | 2023-07-08 | 9.625 | England/CLIMB-CM7YREUP/2023|2023-08-26 | BBBABBBBBBBBBAAAAABBBBBBBB | (20, 6, 5) | 0.00217609 | 47 | 5 | Too_many_mutations_near_INDELs, |
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| 15 | node_1099578 | node_1183037 | node_1070148 | (22910,22910) | (26833,26858) | 21L (Omicron) | BA.2.86 | 22E (Omicron) | BQ.1.32 | 21L (Omicron) | BA.2 | 2023-07-08 | 9.625 | England/CLIMB-CM7YREUP/2023|2023-08-26 | BBBABBBBBBBBBBAAAAABBBBBBBBB | (22, 6, 5) | 0.00157934 | 47 | 5 | Too_many_mutations_near_INDELs, |
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| 16 | node_1099578 | node_1183057 | node_1070148 | (22916,22917) | (26858,27259) | 21L (Omicron) | BA.2.86 | 22E (Omicron) | BQ.1 | 21L (Omicron) | BA.2 | 2023-07-08 | 9.625 | England/CLIMB-CM7YREUP/2023|2023-08-26 | BBBABBBBBBBBBAAAAABBBBBBBB | (20, 6, 5) | 0.00217609 | 47 | 5 | Too_many_mutations_near_INDELs, |
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| 17 | node_1033564 | node_1001296 | node_1033561 | (23673,25000) | (28297,28657) | 23A (Omicron) | XCH | 23D (XBB.1.9) | FL.1.5 | 23A (Omicron) | GK.1.3 | 2023-07-05 | 6.53125 | England/CLIMB-CM7YE59E/2023|2023-08-09 | BBBBBBBBBBBBBBBBBBBBAAAAAAB | (21, 6, 6) | 7.43218e-05 | 6 | 5 | PASS |
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| 18 | node_1033605 | node_1437080 | node_1033458 | (405,670) | (12880,15451) | 23A (Omicron) | XCL | 21L (Omicron) | BA.2 | 23A (Omicron) | GK.2.1 | 2023-06-29 | 6.5 | Scotland/CLIMB-CM7YMQ7J/2023|2023-07-30 | BAAAAAABBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB | (37, 6, 6) | 6.23313e-06 | 5 | 4 | PASS |
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| 19 | node_1056347 | node_1055591 | node_989286 | - | (26858,27431) | 23E (XBB.2.3) | XBB.2.3 | 23E (XBB.2.3) | XBB.2.3 | 23B (Omicron) | XBB.1.16 | 2023-07-02 | 3.875 | USA/MN-MDH-35826/2023|OR499804.1|2023-08-10 | AAAAAAAAAAAAAAAABBBBBBBBB | (16, 9, 9) | 8.3212e-06 | 8 | 3 | Too_many_mutations_near_INDELs, |
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| 20 | node_1056347 | node_1055591 | node_989690 | - | (22995,27431) | 23E (XBB.2.3) | XBB.2.3 | 23E (XBB.2.3) | XBB.2.3 | 23B (Omicron) | XBB.1.16 | 2023-07-02 | 3.875 | USA/MN-MDH-35826/2023|OR499804.1|2023-08-10 | AAAAAAAAAAAAAABBBBBBBBB | (14, 9, 9) | 1.83556e-05 | 8 | 3 | Too_many_mutations_near_INDELs, |
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| 21 | node_1056347 | node_1055591 | node_989302 | - | (23123,27431) | 23E (XBB.2.3) | XBB.2.3 | 23E (XBB.2.3) | XBB.2.3 | 23B (Omicron) | XBB.1.16 | 2023-07-02 | 3.875 | USA/MN-MDH-35826/2023|OR499804.1|2023-08-10 | AAAAAAAAAAAAAAAAAAAAABBBBBBBBB | (21, 9, 9) | 1.53769e-06 | 8 | 3 | PASS |
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| 22 | node_986008 | node_1056422 | node_1070148 | - | (23040,23955) | 21L (Omicron) | BA.2.10.1 | 21L (Omicron) | BJ.1 | 21L (Omicron) | BA.2 | 2022-08-07 | 2.96246 | USA/NY-CDC-LC1040143/2023|OQ954933.1|2023-04-20 | AAAAAAAAAABBBBBBBABBBBBBBB | (11, 15, 14) | 3.57228e-05 | 6 | 6 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump, |
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| 23 | node_986008 | node_1056422 | node_1099604 | (405,15738) | (23040,23955) | 21L (Omicron) | BA.2.10.1 | 21L (Omicron) | BJ.1 | 21L (Omicron) | BA.2 | 2022-08-07 | 2.96246 | USA/NY-CDC-LC1040143/2023|OQ954933.1|2023-04-20 | AAAAAAAAAAAAABBABBAABBBBBBBB | (16, 12, 9) | 0.00134608 | 6 | 6 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump, |
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| 24 | node_986008 | node_1070148 | node_986007 | (23040,23948) | - | 21L (Omicron) | BA.2.10.1 | 21L (Omicron) | BA.2 | 21L (Omicron) | BA.2.10.1 | 2022-08-07 | 2.96246 | USA/NY-CDC-LC1040143/2023|OQ954933.1|2023-04-20 | BBBBBBBBBBBAAA | (11, 3, 3) | 0.032967 | 6 | 6 | Too_many_mutations_near_INDELs, |
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| 25 | node_999096 | node_1002310 | node_999090 | (27507,28245) | (28881,29625) | 23F (EG.5.1) | EG.5.1.6 | 23D (XBB.1.9) | FL.9 | 23F (EG.5.1) | EG.5.1.6 | 2023-07-25 | 2.75 | Wales/CLIMB-CM7YRUJN/2023|2023-07-30 | BBBBBBBBBBBBBBBBBBAAABB | (20, 3, 3) | 0.0118577 | 3 | 3 | cluster, |
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| 26 | node_1000772 | node_1000607 | node_989116 | (9693,10449) | (22995,27065) | 23F (EG.5.1) | EG.5.1 | 23F (EG.5.1) | EG.5.1 | 23B (Omicron) | XBB.1.16.19 | 2023-07-21 | 2.5 | USA/OSPHL08813/2023|OR479939.1|2023-08-16 | BBBBBAAAAAAAAAAAAAAAABBBBB | (10, 16, 16) | 2.07089e-06 | 7 | 6 | Alt, |
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| 27 | node_1000772 | node_1000771 | node_989116 | (7044,9534) | (22995,27065) | 23F (EG.5.1) | EG.5.1 | 23F (EG.5.1) | EG.5.1 | 23B (Omicron) | XBB.1.16.19 | 2023-07-21 | 2.5 | USA/OSPHL08813/2023|OR479939.1|2023-08-16 | BBAAAAAAAAAAAAAAAABBBB | (6, 16, 16) | 9.38174e-05 | 7 | 6 | PASS |
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| 28 | node_1055741 | node_1023337 | node_1055721 | (17674,20055) | (21296,22317) | 23E (XBB.2.3) | GE.1 | 23A (Omicron) | XBB.1.5 | 23E (XBB.2.3) | GE.1 | 2023-06-02 | 2.23438 | England/CLIMB-CM7YR8OM/2023|2023-08-02 | BBBBBBBBBAAABBBBBBB | (16, 3, 3) | 0.0175439 | 4 | 3 | cluster, |
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| 29 | node_988662 | node_990630 | node_1006929 | - | (18703,22101) | 22F (Omicron) | XBB.1 | 23B (Omicron) | XBB.1.16 | 22F (Omicron) | XBB.1.18.1 | 2023-07-06 | 2 | England/CLIMB-CM7YJW5P/2023|2023-07-11 | AAAAAAAAAABBBBBBB | (10, 7, 7) | 0.000565611 | 8 | 6 | Too_many_mutations_near_INDELs, |
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| 30 | node_989302 | node_1000009 | node_989292 | (25572,26709) | (27807,28093) | 23B (Omicron) | XBB.1.16 | 23F (EG.5.1) | EG.5.1.1 | 23B (Omicron) | XBB.1.16 | 2023-07-26 | 1.5 | England/CLIMB-CM7YF5KS/2023|2023-07-29 | BBBBBBBBBBBBBBBBBBBBBBBBBBBAAABBB | (30, 3, 3) | 0.00568182 | 5 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 31 | node_989302 | node_1000503 | node_989292 | (25572,26709) | (28447,29632) | 23B (Omicron) | XBB.1.16 | 23F (EG.5.1) | EG.5.1.1 | 23B (Omicron) | XBB.1.16 | 2023-07-26 | 1.5 | England/CLIMB-CM7YF5KS/2023|2023-07-29 | BBBBBBBBBBBBBBBBBBBBBBBBBAAA | (25, 3, 3) | 0.00793651 | 5 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 32 | node_989302 | node_1000501 | node_989292 | (25572,26709) | (28271,28447) | 23B (Omicron) | XBB.1.16 | 23F (EG.5.1) | EG.5.1.1 | 23B (Omicron) | XBB.1.16 | 2023-07-26 | 1.5 | England/CLIMB-CM7YF5KS/2023|2023-07-29 | BBBBBBBBBBBBBBBBBBBBBBBBBAAABB | (27, 3, 3) | 0.00689655 | 5 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 33 | node_989302 | node_989292 | node_990180 | - | (17331,26753) | 23B (Omicron) | XBB.1.16 | 23B (Omicron) | XBB.1.16 | 23B (Omicron) | XBB.1.16 | 2023-07-26 | 1.5 | England/CLIMB-CM7YF5KS/2023|2023-07-29 | AAAAABBB | (5, 3, 3) | 0.107143 | 5 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 34 | node_989302 | node_989292 | node_1000503 | - | (25584,26753) | 23B (Omicron) | XBB.1.16 | 23B (Omicron) | XBB.1.16 | 23F (EG.5.1) | EG.5.1.1 | 2023-07-26 | 1.5 | England/CLIMB-CM7YF5KS/2023|2023-07-29 | AAAAAAAAAAAAAAAAAAAAAAAAABBB | (25, 3, 3) | 0.00793651 | 5 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 35 | node_989302 | node_989292 | node_988698 | - | (18555,26753) | 23B (Omicron) | XBB.1.16 | 23B (Omicron) | XBB.1.16 | 23B (Omicron) | XBB.1.16 | 2023-07-26 | 1.5 | England/CLIMB-CM7YF5KS/2023|2023-07-29 | AAAAAABBB | (6, 3, 3) | 0.0833333 | 5 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 36 | node_997660 | node_998143 | node_1034275 | (18163,22578) | - | 23D (XBB.1.9) | EG.1 | 23D (XBB.1.9) | EG.1 | 23A (Omicron) | XBB.1.5 | 2023-07-23 | 1.5 | Wales/CLIMB-CM7YGY78/2023|2023-08-12 | BBBBBAAAAA | (5, 5, 5) | 0.0238095 | 8 | 3 | Alt, |
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| 37 | node_989302 | node_988698 | node_989292 | (18555,22995) | (29386,29632) | 23B (Omicron) | XBB.1.16 | 23B (Omicron) | XBB.1.16 | 23B (Omicron) | XBB.1.16 | 2023-07-26 | 1.5 | England/CLIMB-CM7YF5KS/2023|2023-07-29 | BBBBBBAAA | (6, 3, 3) | 0.0833333 | 5 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 38 | node_989302 | node_989292 | node_1000504 | - | (22995,26753) | 23B (Omicron) | XBB.1.16 | 23B (Omicron) | XBB.1.16 | 23F (EG.5.1) | EG.5.1.1 | 2023-07-26 | 1.5 | England/CLIMB-CM7YF5KS/2023|2023-07-29 | AAAAAAAAAAAAAAAAAAAAAAAABBB | (24, 3, 3) | 0.00854701 | 5 | 3 | Alt, |
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| 39 | node_989302 | node_1000504 | node_989292 | (22995,25416) | (27807,29632) | 23B (Omicron) | XBB.1.16 | 23F (EG.5.1) | EG.5.1.1 | 23B (Omicron) | XBB.1.16 | 2023-07-26 | 1.5 | England/CLIMB-CM7YF5KS/2023|2023-07-29 | BBBBBBBBBBBBBBBBBBBBBBBBAAA | (24, 3, 3) | 0.00854701 | 5 | 3 | Alt, |
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| 40 | node_989302 | node_988633 | node_989292 | (18703,22995) | (28447,29386) | 23B (Omicron) | XBB.1.16 | 22F (Omicron) | XBB.1 | 23B (Omicron) | XBB.1.16 | 2023-07-26 | 1.5 | England/CLIMB-CM7YF5KS/2023|2023-07-29 | BBBBBBBBBBBBBAAAB | (14, 3, 3) | 0.0220588 | 5 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 41 | node_989302 | node_1001806 | node_989292 | (22101,22995) | (27807,28447) | 23B (Omicron) | XBB.1.16 | 23D (XBB.1.9) | FL.10 | 23B (Omicron) | XBB.1.16 | 2023-07-26 | 1.5 | England/CLIMB-CM7YF5KS/2023|2023-07-29 | BBBBBBBBBBBBBBAAABB | (16, 3, 3) | 0.0175439 | 5 | 3 | Alt, |
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| 42 | node_989302 | node_988632 | node_989292 | (18703,22101) | (27807,28447) | 23B (Omicron) | XBB.1.16 | 22F (Omicron) | XBB.1 | 23B (Omicron) | XBB.1.16 | 2023-07-26 | 1.5 | England/CLIMB-CM7YF5KS/2023|2023-07-29 | BBBBBBBBBBBBBAAABB | (15, 3, 3) | 0.0196078 | 5 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 43 | node_989302 | node_988665 | node_989292 | (18555,18703) | (28447,29386) | 23B (Omicron) | XBB.1.16 | 23B (Omicron) | XBB.1.16 | 23B (Omicron) | XBB.1.16 | 2023-07-26 | 1.5 | England/CLIMB-CM7YF5KS/2023|2023-07-29 | BBBBBBAAAB | (7, 3, 3) | 0.0666667 | 5 | 3 | Alt, |
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| 44 | node_989302 | node_988648 | node_989292 | (18555,18703) | (28297,28447) | 23B (Omicron) | XBB.1.16 | 22F (Omicron) | XBB.1 | 23B (Omicron) | XBB.1.16 | 2023-07-26 | 1.5 | England/CLIMB-CM7YF5KS/2023|2023-07-29 | BBBBBBAAABB | (8, 3, 3) | 0.0545455 | 5 | 3 | Alt, |
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| 45 | node_989302 | node_988640 | node_989292 | (18555,18703) | (27807,28297) | 23B (Omicron) | XBB.1.16 | 22F (Omicron) | XBB.1 | 23B (Omicron) | XBB.1.16 | 2023-07-26 | 1.5 | England/CLIMB-CM7YF5KS/2023|2023-07-29 | BBBBBBAAABBB | (9, 3, 3) | 0.0454545 | 5 | 3 | Alt, |
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| 46 | node_997660 | node_1026820 | node_998143 | (3768,4321) | (22594,23401) | 23D (XBB.1.9) | EG.1 | 23A (Omicron) | XBB.1.5 | 23D (XBB.1.9) | EG.1 | 2023-07-23 | 1.5 | Wales/CLIMB-CM7YGY78/2023|2023-08-12 | AAAAABBBBBB | (5, 6, 6) | 0.012987 | 8 | 3 | Alt, |
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| 47 | node_997660 | node_998143 | node_1034275 | (22594,22594) | - | 23D (XBB.1.9) | EG.1 | 23D (XBB.1.9) | EG.1 | 23A (Omicron) | XBB.1.5 | 2023-07-23 | 1.5 | Wales/CLIMB-CM7YGY78/2023|2023-08-12 | BBBBBAAAAA | (5, 5, 5) | 0.0238095 | 8 | 3 | PASS |
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| 48 | node_997660 | node_1034085 | node_998143 | (4556,4556) | (21618,22594) | 23D (XBB.1.9) | EG.1 | 23A (Omicron) | XBB.1.5 | 23D (XBB.1.9) | EG.1 | 2023-07-23 | 1.5 | Wales/CLIMB-CM7YGY78/2023|2023-08-12 | BAAAAABBBBBBBB | (9, 5, 5) | 0.00499501 | 8 | 3 | Too_many_mutations_near_INDELs, |
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| 49 | node_997660 | node_1028453 | node_998143 | (823,3768) | (21618,22594) | 23D (XBB.1.9) | EG.1 | 23A (Omicron) | XBB.1.5.92_823 | 23D (XBB.1.9) | EG.1 | 2023-07-23 | 1.5 | Wales/CLIMB-CM7YGY78/2023|2023-08-12 | BAAAAABBBBB | (6, 5, 5) | 0.0151515 | 8 | 3 | Alt, |
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| 50 | node_997660 | node_1026820 | node_998143 | (4556,4556) | (22594,23401) | 23D (XBB.1.9) | EG.1 | 23A (Omicron) | XBB.1.5 | 23D (XBB.1.9) | EG.1 | 2023-07-23 | 1.5 | Wales/CLIMB-CM7YGY78/2023|2023-08-12 | AAAAABBBBBB | (5, 6, 6) | 0.012987 | 8 | 3 | Alt, |
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| 51 | node_997660 | node_1028216 | node_998143 | (3768,4556) | (17124,21583) | 23D (XBB.1.9) | EG.1 | 23A (Omicron) | XBB.1.5 | 23D (XBB.1.9) | EG.1 | 2023-07-23 | 1.5 | Wales/CLIMB-CM7YGY78/2023|2023-08-12 | BAAAAABBBBBBB | (8, 5, 5) | 0.00699301 | 8 | 3 | Alt, |
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| 52 | node_989302 | node_990180 | node_989292 | (17331,18555) | (27807,29632) | 23B (Omicron) | XBB.1.16 | 23B (Omicron) | XBB.1.16 | 23B (Omicron) | XBB.1.16 | 2023-07-26 | 1.5 | England/CLIMB-CM7YF5KS/2023|2023-07-29 | BBBBBAAA | (5, 3, 3) | 0.107143 | 5 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 53 | node_997660 | node_998143 | node_1026820 | (22594,22995) | - | 23D (XBB.1.9) | EG.1 | 23D (XBB.1.9) | EG.1 | 23A (Omicron) | XBB.1.5 | 2023-07-23 | 1.5 | Wales/CLIMB-CM7YGY78/2023|2023-08-12 | BBBBBAAAAAA | (5, 6, 6) | 0.012987 | 8 | 3 | Alt, |
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| 54 | node_989302 | node_989292 | node_1000772 | (670,4293) | (22995,26753) | 23B (Omicron) | XBB.1.16 | 23B (Omicron) | XBB.1.16 | 23F (EG.5.1) | EG.5.1 | 2023-07-26 | 1.5 | England/CLIMB-CM7YF5KS/2023|2023-07-29 | AAAAAAAAAAAAAAAAAAAABBB | (20, 3, 3) | 0.0118577 | 5 | 3 | PASS |
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| 55 | node_997660 | node_998143 | node_1031544 | (17124,18163) | - | 23D (XBB.1.9) | EG.1 | 23D (XBB.1.9) | EG.1 | 23A (Omicron) | XBB.1.5.10 | 2023-07-23 | 1.5 | Wales/CLIMB-CM7YGY78/2023|2023-08-12 | BBBBBAAAAAAAA | (5, 8, 8) | 0.00466201 | 8 | 3 | Alt, |
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| 56 | node_997660 | node_1028216 | node_998143 | (1514,3037) | (17124,21583) | 23D (XBB.1.9) | EG.1 | 23A (Omicron) | XBB.1.5 | 23D (XBB.1.9) | EG.1 | 2023-07-23 | 1.5 | Wales/CLIMB-CM7YGY78/2023|2023-08-12 | BAAAAABBBBBBB | (8, 5, 5) | 0.00699301 | 8 | 3 | Alt, |
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| 57 | node_997660 | node_1034275 | node_998143 | - | (19326,22594) | 23D (XBB.1.9) | EG.1 | 23A (Omicron) | XBB.1.5 | 23D (XBB.1.9) | EG.1 | 2023-07-23 | 1.5 | Wales/CLIMB-CM7YGY78/2023|2023-08-12 | AAAAABBBBB | (5, 5, 5) | 0.0238095 | 8 | 3 | Alt, |
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| 58 | node_997660 | node_1031544 | node_998143 | - | (17124,18395) | 23D (XBB.1.9) | EG.1 | 23A (Omicron) | XBB.1.5.10 | 23D (XBB.1.9) | EG.1 | 2023-07-23 | 1.5 | Wales/CLIMB-CM7YGY78/2023|2023-08-12 | AAAAABBBBBBBB | (5, 8, 8) | 0.00466201 | 8 | 3 | Alt, |
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| 59 | node_997660 | node_1026820 | node_998143 | - | (22594,23401) | 23D (XBB.1.9) | EG.1 | 23A (Omicron) | XBB.1.5 | 23D (XBB.1.9) | EG.1 | 2023-07-23 | 1.5 | Wales/CLIMB-CM7YGY78/2023|2023-08-12 | AAAAABBBBBB | (5, 6, 6) | 0.012987 | 8 | 3 | Alt, |
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| 60 | node_997660 | node_1034085 | node_998143 | (3768,4321) | (21618,22594) | 23D (XBB.1.9) | EG.1 | 23A (Omicron) | XBB.1.5 | 23D (XBB.1.9) | EG.1 | 2023-07-23 | 1.5 | Wales/CLIMB-CM7YGY78/2023|2023-08-12 | BAAAAABBBBBBBB | (9, 5, 5) | 0.00499501 | 8 | 3 | Too_many_mutations_near_INDELs, |
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| 61 | node_1074150 | node_1088079 | node_1074117 | - | (14961,22664) | 22D (Omicron) | FR.1 | 22D (Omicron) | BY.1 | 22D (Omicron) | FR.1 | 2023-03-03 | 1.13086 | CHN/LNCDC-252-16/2023|C_AA036843.1|2023-06-16 | AAABBBBBBBBB | (3, 9, 9) | 0.0181818 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 62 | node_1074150 | node_1074117 | node_1088079 | (14961,22629) | - | 22D (Omicron) | FR.1 | 22D (Omicron) | FR.1 | 22D (Omicron) | BY.1 | 2023-03-03 | 1.13086 | CHN/LNCDC-252-16/2023|C_AA036843.1|2023-06-16 | BBBAAAAAAAAA | (3, 9, 9) | 0.0181818 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 63 | node_986007 | node_1056699 | node_1099592 | (17859,21618) | (26529,29026) | 21L (Omicron) | BA.2.10.1 | 21L (Omicron) | BA.2.10 | 21L (Omicron) | BA.2 | 2022-06-13 | 0.740615 | England/PLYM-326E1E0C/2023|OX449589.1|2023-02-22 | BBBBAAAAAAAA | (4, 8, 8) | 0.010101 | 12 | 4 | Too_many_mutations_near_INDELs, |
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| 64 | node_986007 | node_1056699 | node_1099592 | (21810,22000) | - | 21L (Omicron) | BA.2.10.1 | 21L (Omicron) | BA.2.10 | 21L (Omicron) | BA.2 | 2022-06-13 | 0.740615 | England/PLYM-326E1E0C/2023|OX449589.1|2023-02-22 | BBBBAAAAAAAA | (4, 8, 8) | 0.010101 | 12 | 4 | Too_many_mutations_near_INDELs, |
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| 65 | node_986007 | node_1099592 | node_1056699 | - | (19955,22000) | 21L (Omicron) | BA.2.10.1 | 21L (Omicron) | BA.2 | 21L (Omicron) | BA.2.10 | 2022-06-13 | 0.740615 | England/PLYM-326E1E0C/2023|OX449589.1|2023-02-22 | AAAABBBBBBBB | (4, 8, 8) | 0.010101 | 12 | 4 | Too_many_mutations_near_INDELs, |
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| 66 | node_986007 | node_1099592 | node_1056699 | (405,15451) | (17859,19326) | 21L (Omicron) | BA.2.10.1 | 21L (Omicron) | BA.2 | 21L (Omicron) | BA.2.10 | 2022-06-13 | 0.740615 | England/PLYM-326E1E0C/2023|OX449589.1|2023-02-22 | AAAABBBBBBBB | (4, 8, 8) | 0.010101 | 12 | 4 | Too_many_mutations_near_INDELs, |
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| 67 | node_986007 | node_1099592 | node_1056699 | (405,15451) | (19955,22000) | 21L (Omicron) | BA.2.10.1 | 21L (Omicron) | BA.2 | 21L (Omicron) | BA.2.10 | 2022-06-13 | 0.740615 | England/PLYM-326E1E0C/2023|OX449589.1|2023-02-22 | AAAABBBBBBBB | (4, 8, 8) | 0.010101 | 12 | 4 | Too_many_mutations_near_INDELs, |
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| 68 | node_986007 | node_1099592 | node_1135968 | (405,670) | (22000,22893) | 21L (Omicron) | BA.2.10.1 | 21L (Omicron) | BA.2 | 21L (Omicron) | BA.2 | 2022-06-13 | 0.740615 | England/PLYM-326E1E0C/2023|OX449589.1|2023-02-22 | BAAAAAAAABBBBBBB | (8, 8, 8) | 0.000699301 | 12 | 4 | Too_many_mutations_near_INDELs, |
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| 69 | node_986007 | node_1099592 | node_1411282 | - | (22000,22893) | 21L (Omicron) | BA.2.10.1 | 21L (Omicron) | BA.2 | 21L (Omicron) | XM | 2022-06-13 | 0.740615 | England/PLYM-326E1E0C/2023|OX449589.1|2023-02-22 | AAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBB | (27, 8, 8) | 1.18968e-06 | 12 | 4 | Too_many_mutations_near_INDELs, |
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| 70 | node_986007 | node_1099592 | node_1411282 | (405,405) | (22000,22893) | 21L (Omicron) | BA.2.10.1 | 21L (Omicron) | BA.2 | 21L (Omicron) | XM | 2022-06-13 | 0.740615 | England/PLYM-326E1E0C/2023|OX449589.1|2023-02-22 | AAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBB | (27, 8, 8) | 1.18968e-06 | 12 | 4 | Too_many_mutations_near_INDELs, |
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| 71 | node_986007 | node_1099592 | node_1415377 | (670,15451) | (22688,22893) | 21L (Omicron) | BA.2.10.1 | 21L (Omicron) | BA.2 | 21L (Omicron) | BA.2 | 2022-06-13 | 0.740615 | England/PLYM-326E1E0C/2023|OX449589.1|2023-02-22 | AAAAAAAABBBBBBBB | (8, 8, 8) | 0.000699301 | 12 | 4 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump, |
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| 72 | node_986007 | node_1099592 | node_949679 | (670,4321) | (22000,22893) | 21L (Omicron) | BA.2.10.1 | 21L (Omicron) | BA.2 | 21L (Omicron) | BA.2 | 2022-06-13 | 0.740615 | England/PLYM-326E1E0C/2023|OX449589.1|2023-02-22 | AAAAAABBBBBBBB | (6, 8, 8) | 0.002331 | 12 | 4 | Too_many_mutations_near_INDELs, |
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| 73 | node_986007 | node_1099592 | node_958814 | (4321,15451) | (22000,22893) | 21L (Omicron) | BA.2.10.1 | 21L (Omicron) | BA.2 | 21L (Omicron) | BA.2 | 2022-06-13 | 0.740615 | England/PLYM-326E1E0C/2023|OX449589.1|2023-02-22 | AAAAABBBBBBBB | (5, 8, 8) | 0.00466201 | 12 | 4 | Too_many_mutations_near_INDELs, |
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| 74 | node_986007 | node_1099592 | node_977370 | (670,15451) | (22200,22893) | 21L (Omicron) | BA.2.10.1 | 21L (Omicron) | BA.2 | 21L (Omicron) | BA.2 | 2022-06-13 | 0.740615 | England/PLYM-326E1E0C/2023|OX449589.1|2023-02-22 | AAAAABBBBBBBB | (5, 8, 8) | 0.00466201 | 12 | 4 | Too_many_mutations_near_INDELs, |
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| 75 | node_986007 | node_1140957 | node_1099592 | (22109,22882) | (26529,29160) | 21L (Omicron) | BA.2.10.1 | 21L (Omicron) | BA.2.16 | 21L (Omicron) | BA.2 | 2022-06-13 | 0.740615 | England/PLYM-326E1E0C/2023|OX449589.1|2023-02-22 | BBBBBBBAAAAAAAAB | (8, 8, 8) | 0.000699301 | 12 | 4 | Too_many_mutations_near_INDELs, |
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| 76 | node_986007 | node_1099592 | node_1056699 | - | (17859,19326) | 21L (Omicron) | BA.2.10.1 | 21L (Omicron) | BA.2 | 21L (Omicron) | BA.2.10 | 2022-06-13 | 0.740615 | England/PLYM-326E1E0C/2023|OX449589.1|2023-02-22 | AAAABBBBBBBB | (4, 8, 8) | 0.010101 | 12 | 4 | Too_many_mutations_near_INDELs, |
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| 77 | node_986007 | node_1056699 | node_1099592 | (17859,21618) | - | 21L (Omicron) | BA.2.10.1 | 21L (Omicron) | BA.2.10 | 21L (Omicron) | BA.2 | 2022-06-13 | 0.740615 | England/PLYM-326E1E0C/2023|OX449589.1|2023-02-22 | BBBBAAAAAAAA | (4, 8, 8) | 0.010101 | 12 | 4 | Too_many_mutations_near_INDELs, |
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| 78 | node_986007 | node_1056699 | node_1099592 | (21810,22000) | (26529,29026) | 21L (Omicron) | BA.2.10.1 | 21L (Omicron) | BA.2.10 | 21L (Omicron) | BA.2 | 2022-06-13 | 0.740615 | England/PLYM-326E1E0C/2023|OX449589.1|2023-02-22 | BBBBAAAAAAAA | (4, 8, 8) | 0.010101 | 12 | 4 | Too_many_mutations_near_INDELs, |
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| 79 | node_1055887 | node_1077288 | node_1055583 | (27876,27880) | (28881,29706) | 23E (XBB.2.3) | GE.1 | 23C (CH.1.1) | CH.1.1.25 | 23E (XBB.2.3) | XBB.2.3.11 | 2023-05-02 | 0.501953 | USA/FL-CDC-QDX48956840/2023|OQ860513.1|2023-04-10 | BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBAAAAB | (43, 4, 4) | 0.000246685 | 10 | 4 | cluster, |
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| 80 | node_1055887 | node_1077288 | node_1055583 | (27576,27807) | (28881,29706) | 23E (XBB.2.3) | GE.1 | 23C (CH.1.1) | CH.1.1.25 | 23E (XBB.2.3) | XBB.2.3.11 | 2023-05-02 | 0.501953 | USA/FL-CDC-QDX48956840/2023|OQ860513.1|2023-04-10 | BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBAAAAB | (43, 4, 4) | 0.000246685 | 10 | 4 | cluster, |
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| 81 | node_988568 | node_1064518 | node_988650 | (8991,10449) | (15237,15451) | 22F (Omicron) | XBB.1.22.2 | 21L (Omicron) | BA.2.3 | 22F (Omicron) | XBB.1 | 2023-02-23 | 0.46521 | England/BRBR-3271A100/2023|2023-04-26 | BBAAAABBBBBBBBBBBBBBBBBBBBBBBBBBBBBB | (32, 4, 4) | 0.000560224 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 82 | node_988568 | node_1064518 | node_988650 | (11146,11750) | (15237,15451) | 22F (Omicron) | XBB.1.22.2 | 21L (Omicron) | BA.2.3 | 22F (Omicron) | XBB.1 | 2023-02-23 | 0.46521 | England/BRBR-3271A100/2023|2023-04-26 | BBAAAABBBBBBBBBBBBBBBBBBBBBBBBBBBBBB | (32, 4, 4) | 0.000560224 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 83 | node_1055046 | node_989206 | node_1055044 | - | (11956,12730) | 23E (XBB.2.3) | XBB.2.3.3 | 23B (Omicron) | XBB.1.16 | 23E (XBB.2.3) | XBB.2.3.3 | 2023-05-29 | 0.3125 | USA/AZ-CDC-QDX82805649/2023|OR364170.1|2023-07-09 | AAAAABBBBBBBBBBBBBBBBBBB | (5, 19, 19) | 0.000141163 | 7 | 5 | PASS |
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| 84 | node_1002477 | node_1002475 | node_1012170 | - | (23457,28297) | 23D (XBB.1.9) | XBB.1.9.1 | 23D (XBB.1.9) | XBB.1.9.1 | 23A (Omicron) | XBB.1.5 | 2023-04-15 | 0.242188 | Wales/PHWC-PKO67N/2023|2023-05-24 | AAAAAAAABBB | (8, 3, 3) | 0.0545455 | 3 | 3 | PASS |
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| 85 | node_988803 | node_988646 | node_1000772 | (11956,12730) | (28297,29386) | 23B (Omicron) | XBB.1.16 | 22F (Omicron) | XBB.1 | 23F (EG.5.1) | EG.5.1 | 2023-05-07 | 0.207031 | England/CLIMB-CM7YK4P7/2023|2023-08-21 | BBAAAAAAAAAAB | (3, 10, 10) | 0.013986 | 4 | 4 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 86 | node_988803 | node_988638 | node_1000772 | (11956,12730) | (22942,28297) | 23B (Omicron) | XBB.1.16 | 22F (Omicron) | XBB.1 | 23F (EG.5.1) | EG.5.1 | 2023-05-07 | 0.207031 | England/CLIMB-CM7YK4P7/2023|2023-08-21 | BAAAAAAAAAABB | (3, 10, 10) | 0.013986 | 4 | 4 | PASS |
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| 87 | node_987490 | node_1007852 | node_987471 | (405,3037) | (5183,12444) | 22F (Omicron) | XBB.1.5.57 | 22F (Omicron) | XBB.1 | 22F (Omicron) | XBB.1.5.57 | 2023-03-02 | 0.187683 | England/PHEP-YYGIZD1/2023|2023-06-02 | BAAABB | (3, 3, 3) | 0.2 | 4 | 3 | Alt, |
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| 88 | node_987490 | node_1007852 | node_987471 | (405,3037) | (12880,20379) | 22F (Omicron) | XBB.1.5.57 | 22F (Omicron) | XBB.1 | 22F (Omicron) | XBB.1.5.57 | 2023-03-02 | 0.187683 | England/PHEP-YYGIZD1/2023|2023-06-02 | BAAABB | (3, 3, 3) | 0.2 | 4 | 3 | Alt, |
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| 89 | node_987490 | node_1071286 | node_987471 | (593,3037) | (3927,4586) | 22F (Omicron) | XBB.1.5.57 | 22D (Omicron) | BN.1.3 | 22F (Omicron) | XBB.1.5.57 | 2023-03-02 | 0.187683 | England/PHEP-YYGIZD1/2023|2023-06-02 | BBAAABABBBBBBBBBBBBBBBBBBBBBBBBBBBBBB | (33, 4, 3) | 0.0180029 | 4 | 3 | Too_many_mutations_near_INDELs, |
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| 90 | node_987490 | node_1007852 | node_987471 | (3446,3796) | (12880,20379) | 22F (Omicron) | XBB.1.5.57 | 22F (Omicron) | XBB.1 | 22F (Omicron) | XBB.1.5.57 | 2023-03-02 | 0.187683 | England/PHEP-YYGIZD1/2023|2023-06-02 | BAAABB | (3, 3, 3) | 0.2 | 4 | 3 | PASS |
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| 91 | node_987490 | node_1007852 | node_987471 | (3446,3796) | (5183,12444) | 22F (Omicron) | XBB.1.5.57 | 22F (Omicron) | XBB.1 | 22F (Omicron) | XBB.1.5.57 | 2023-03-02 | 0.187683 | England/PHEP-YYGIZD1/2023|2023-06-02 | BAAABB | (3, 3, 3) | 0.2 | 4 | 3 | Alt, |
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| 92 | node_991558 | node_1000917 | node_991557 | (13252,14408) | (19326,22101) | 23B (Omicron) | XBB.1.16.1 | 23D (XBB.1.9) | XBB.1.9.1 | 23B (Omicron) | XBB.1.16.1 | 2023-06-05 | 0.171875 | USA/LA-CDC-LC1050831/2023|OR469341.1|2023-08-04 | BBBBBAAABBBBBA | (10, 4, 3) | 0.130869 | 5 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 93 | node_1033835 | node_993276 | node_1033834 | - | (11956,12674) | 23A (Omicron) | XBB.1.5.71 | 23B (Omicron) | XBB.1.16 | 23A (Omicron) | XBB.1.5.71 | 2023-06-03 | 0.15625 | England/CLIMB-CM7YFKTT/2023|2023-06-14 | AAABBBBBBBBBBBBBBBBB | (3, 17, 17) | 0.00350877 | 3 | 3 | Too_many_mutations_near_INDELs, |
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| 94 | node_1002310 | node_1005894 | node_1002295 | (23707,25584) | (29510,29691) | 23D (XBB.1.9) | FL.9 | 23D (XBB.1.9) | FL.3 | 23D (XBB.1.9) | FL.9 | 2023-04-25 | 0.125 | England/BRBR-3271A407/2023|OX940697.1|2023-05-05 | BBBBBBAAAB | (7, 3, 3) | 0.0666667 | 4 | 3 | Too_many_mutations_near_INDELs, |
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| 95 | node_1002310 | node_1005894 | node_1002295 | (26022,28245) | (29510,29691) | 23D (XBB.1.9) | FL.9 | 23D (XBB.1.9) | FL.3 | 23D (XBB.1.9) | FL.9 | 2023-04-25 | 0.125 | England/BRBR-3271A407/2023|OX940697.1|2023-05-05 | BBBBBBAAAB | (7, 3, 3) | 0.0666667 | 4 | 3 | Too_many_mutations_near_INDELs, |
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| 96 | node_1002310 | node_1003799 | node_1002295 | (23707,27807) | (28254,29353) | 23D (XBB.1.9) | FL.9 | 23D (XBB.1.9) | FL.2 | 23D (XBB.1.9) | FL.9 | 2023-04-25 | 0.125 | England/BRBR-3271A407/2023|OX940697.1|2023-05-05 | BBBBBBBAAABB | (9, 3, 3) | 0.0454545 | 4 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 97 | node_994065 | node_988757 | node_1056345 | - | (22320,23123) | 23B (Omicron) | XBB.1.16 | 23B (Omicron) | XBB.1.16 | 23E (XBB.2.3) | XBB.2.3 | 2023-04-16 | 0.119141 | England/PHEP-YYGI363/2023|2023-06-02 | AAAAAAAAAABBBBBB | (10, 6, 6) | 0.00137363 | 7 | 7 | Too_many_mutations_near_INDELs, |
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| 98 | node_994065 | node_1056019 | node_988640 | (22317,22320) | (28271,29510) | 23B (Omicron) | XBB.1.16 | 23E (XBB.2.3) | XBB.2.3 | 22F (Omicron) | XBB.1 | 2023-04-16 | 0.119141 | England/PHEP-YYGI363/2023|2023-06-02 | BBBBBBBBBBAAAABB | (12, 4, 4) | 0.00714286 | 7 | 7 | Too_many_mutations_near_INDELs, |
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| 99 | node_994065 | node_988640 | node_1056345 | - | (22317,22320) | 23B (Omicron) | XBB.1.16 | 22F (Omicron) | XBB.1 | 23E (XBB.2.3) | XBB.2.3 | 2023-04-16 | 0.119141 | England/PHEP-YYGI363/2023|2023-06-02 | AAAAAAAAAABBBB | (10, 4, 4) | 0.010989 | 7 | 7 | PASS |
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| 100 | node_1006359 | node_1001083 | node_987529 | (3020,3037) | (21618,23465) | 23D (XBB.1.9) | XBB.1.9 | 23D (XBB.1.9) | XBB.1.9.1 | 22F (Omicron) | XBL | 2023-02-16 | 0.0810547 | England/PHEP-YYGTJBC/2023|2023-03-21 | BBAAAAAABBAABBBBB | (9, 8, 6) | 0.0398601 | 6 | 4 | Too_many_mutations_near_INDELs, |
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| 101 | node_1006359 | node_1001083 | node_987529 | (313,2790) | (21618,23465) | 23D (XBB.1.9) | XBB.1.9 | 23D (XBB.1.9) | XBB.1.9.1 | 22F (Omicron) | XBL | 2023-02-16 | 0.0810547 | England/PHEP-YYGTJBC/2023|2023-03-21 | BBAAAAAABBAABBBBB | (9, 8, 6) | 0.0398601 | 6 | 4 | Too_many_mutations_near_INDELs, |
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| 102 | node_1006359 | node_1001083 | node_987529 | - | (21618,23465) | 23D (XBB.1.9) | XBB.1.9 | 23D (XBB.1.9) | XBB.1.9.1 | 22F (Omicron) | XBL | 2023-02-16 | 0.0810547 | England/PHEP-YYGTJBC/2023|2023-03-21 | BBAAAAAABBAABBBBB | (9, 8, 6) | 0.0398601 | 6 | 4 | Too_many_mutations_near_INDELs, |
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| 103 | node_1006359 | node_987529 | node_1001083 | (22286,23465) | - | 23D (XBB.1.9) | XBB.1.9 | 22F (Omicron) | XBL | 23D (XBB.1.9) | XBB.1.9.1 | 2023-02-16 | 0.0810547 | England/PHEP-YYGTJBC/2023|2023-03-21 | AABBBBBBAABBAAAAA | (9, 8, 6) | 0.0398601 | 6 | 4 | Too_many_mutations_near_INDELs, |
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| 104 | node_1006359 | node_987529 | node_1001083 | (20379,22200) | - | 23D (XBB.1.9) | XBB.1.9 | 22F (Omicron) | XBL | 23D (XBB.1.9) | XBB.1.9.1 | 2023-02-16 | 0.0810547 | England/PHEP-YYGTJBC/2023|2023-03-21 | AABBBBBBAABBAAAAA | (9, 8, 6) | 0.0398601 | 6 | 4 | Too_many_mutations_near_INDELs, |
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| 105 | node_988698 | node_1043906 | node_990489 | (1101,2015) | (9344,11750) | 23B (Omicron) | XBB.1.16 | 23A (Omicron) | XBB.1.5 | 23B (Omicron) | XBB.1.16 | 2023-05-08 | 0.078125 | USA/MN-MDH-35670/2023|OR233552.1|2023-05-25 | BAAABBBBBBBBBBB | (12, 3, 3) | 0.0285714 | 7 | 5 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 106 | node_1019253 | node_1019252 | node_1001083 | - | (12880,17124) | 23A (Omicron) | XBB.1.5.20 | 23A (Omicron) | XBB.1.5.20 | 23D (XBB.1.9) | XBB.1.9.1 | 2023-04-16 | 0.0664062 | England/PHEP-YYGIJ8A/2023|2023-05-12 | AAAAAAAAAAABABBA | (13, 3, 2) | 0.35 | 4 | 3 | Too_many_mutations_near_INDELs, |
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| 107 | node_1019253 | node_986504 | node_1019252 | (10204,10449) | - | 23A (Omicron) | XBB.1.5.20 | 22F (Omicron) | XBB.1.22 | 23A (Omicron) | XBB.1.5.20 | 2023-04-16 | 0.0664062 | England/PHEP-YYGIJ8A/2023|2023-05-12 | BBBBBAAA | (5, 3, 3) | 0.107143 | 4 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 108 | node_1019253 | node_1019252 | node_986504 | - | (10204,17124) | 23A (Omicron) | XBB.1.5.20 | 23A (Omicron) | XBB.1.5.20 | 22F (Omicron) | XBB.1.22 | 2023-04-16 | 0.0664062 | England/PHEP-YYGIJ8A/2023|2023-05-12 | AAAAABBB | (5, 3, 3) | 0.107143 | 4 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 109 | node_1019253 | node_1001083 | node_1019252 | (12789,16342) | (28297,29095) | 23A (Omicron) | XBB.1.5.20 | 23D (XBB.1.9) | XBB.1.9.1 | 23A (Omicron) | XBB.1.5.20 | 2023-04-16 | 0.0664062 | England/PHEP-YYGIJ8A/2023|2023-05-12 | BBBBBBBBBBBABAAB | (13, 3, 2) | 0.35 | 4 | 3 | Too_many_mutations_near_INDELs, |
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| 110 | node_993945 | node_1017677 | node_988698 | (23075,27259) | (27807,28297) | 23B (Omicron) | XBB.1.16 | 23A (Omicron) | XBB.1.5 | 23B (Omicron) | XBB.1.16 | 2023-04-11 | 0.0625 | England/PHEP-YYGI9GR/2023|2023-06-03 | BBBBBBBBBAAABBB | (12, 3, 3) | 0.0285714 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 111 | node_993945 | node_1017677 | node_988693 | (22995,23075) | (27807,28297) | 23B (Omicron) | XBB.1.16 | 23A (Omicron) | XBB.1.5 | 23B (Omicron) | XBB.1.16 | 2023-04-11 | 0.0625 | England/PHEP-YYGI9GR/2023|2023-06-03 | BBBBBBBBBAAAABBB | (12, 4, 4) | 0.00714286 | 3 | 3 | Too_many_mutations_near_INDELs, |
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| 112 | node_1070149 | node_1099607 | node_1053304 | (6781,10449) | - | 21L (Omicron) | BA.2.75_dropout | 21L (Omicron) | BA.2 | 22F (Omicron) | XBN | 2022-07-07 | 0.0551848 | England/BRBR-326E5248/2023|2023-02-24 | BBBBAAAAAAAAABBAAAAAAAAAAA | (6, 20, 18) | 0.00660644 | 5 | 3 | Too_many_mutations_near_INDELs, |
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| 113 | node_1070149 | node_1099607 | node_1007852 | (12444,15451) | - | 21L (Omicron) | BA.2.75_dropout | 21L (Omicron) | BA.2 | 22F (Omicron) | XBB.1 | 2022-07-07 | 0.0551848 | England/BRBR-326E5248/2023|2023-02-24 | BBBBAAAAAAABBAAAAAAAAAAAAA | (6, 20, 18) | 0.00660644 | 5 | 3 | Too_many_mutations_near_INDELs, |
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| 114 | node_1070149 | node_1007852 | node_1070148 | - | (15451,15738) | 21L (Omicron) | BA.2.75_dropout | 22F (Omicron) | XBB.1 | 21L (Omicron) | BA.2 | 2022-07-07 | 0.0551848 | England/BRBR-326E5248/2023|2023-02-24 | AAABBBBBBBBBBBBBBBBBB | (3, 18, 18) | 0.00300752 | 5 | 3 | Too_many_mutations_near_INDELs, |
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| 115 | node_1070149 | node_1099607 | node_1053304 | (12444,12444) | - | 21L (Omicron) | BA.2.75_dropout | 21L (Omicron) | BA.2 | 22F (Omicron) | XBN | 2022-07-07 | 0.0551848 | England/BRBR-326E5248/2023|2023-02-24 | BBBBAAAAAAAAABBAAAAAAAAAAA | (6, 20, 18) | 0.00660644 | 5 | 3 | Too_many_mutations_near_INDELs, |
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| 116 | node_1070149 | node_1099617 | node_1070148 | (12444,12880) | (22331,22599) | 21L (Omicron) | BA.2.75_dropout | 21L (Omicron) | BA.2 | 21L (Omicron) | BA.2 | 2022-07-07 | 0.0551848 | England/BRBR-326E5248/2023|2023-02-24 | BBBAAABB | (5, 3, 3) | 0.107143 | 5 | 3 | Too_many_mutations_near_INDELs, |
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| 117 | node_1070149 | node_1099617 | node_1070148 | (13730,14408) | (22331,22599) | 21L (Omicron) | BA.2.75_dropout | 21L (Omicron) | BA.2 | 21L (Omicron) | BA.2 | 2022-07-07 | 0.0551848 | England/BRBR-326E5248/2023|2023-02-24 | BBBAAABB | (5, 3, 3) | 0.107143 | 5 | 3 | Too_many_mutations_near_INDELs, |
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| 118 | node_1070149 | node_1099617 | node_1070148 | (15451,15451) | (22331,22599) | 21L (Omicron) | BA.2.75_dropout | 21L (Omicron) | BA.2 | 21L (Omicron) | BA.2 | 2022-07-07 | 0.0551848 | England/BRBR-326E5248/2023|2023-02-24 | BBBAAABB | (5, 3, 3) | 0.107143 | 5 | 3 | Too_many_mutations_near_INDELs, |
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| 119 | node_1070149 | node_1007852 | node_1070148 | (3857,4586) | (15451,15738) | 21L (Omicron) | BA.2.75_dropout | 22F (Omicron) | XBB.1 | 21L (Omicron) | BA.2 | 2022-07-07 | 0.0551848 | England/BRBR-326E5248/2023|2023-02-24 | AAABBBBBBBBBBBBBBBBBB | (3, 18, 18) | 0.00300752 | 5 | 3 | Too_many_mutations_near_INDELs, |
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| 120 | node_1070149 | node_1007852 | node_1099607 | - | (5183,15738) | 21L (Omicron) | BA.2.75_dropout | 22F (Omicron) | XBB.1 | 21L (Omicron) | BA.2 | 2022-07-07 | 0.0551848 | England/BRBR-326E5248/2023|2023-02-24 | AAAABBBBBBBAABBBBBBBBBBBBB | (6, 20, 18) | 0.00660644 | 5 | 3 | Too_many_mutations_near_INDELs, |
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| 121 | node_1070149 | node_1070148 | node_1007852 | (15451,15714) | - | 21L (Omicron) | BA.2.75_dropout | 21L (Omicron) | BA.2 | 22F (Omicron) | XBB.1 | 2022-07-07 | 0.0551848 | England/BRBR-326E5248/2023|2023-02-24 | BBBAAAAAAAAAAAAAAAAAA | (3, 18, 18) | 0.00300752 | 5 | 3 | Too_many_mutations_near_INDELs, |
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| 122 | node_1070149 | node_1099607 | node_1007852 | (6781,10449) | - | 21L (Omicron) | BA.2.75_dropout | 21L (Omicron) | BA.2 | 22F (Omicron) | XBB.1 | 2022-07-07 | 0.0551848 | England/BRBR-326E5248/2023|2023-02-24 | BBBBAAAAAAABBAAAAAAAAAAAAA | (6, 20, 18) | 0.00660644 | 5 | 3 | Too_many_mutations_near_INDELs, |
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| 123 | node_1070148 | node_1007852 | node_1099617 | - | (12444,15451) | 21L (Omicron) | BA.2 | 22F (Omicron) | XBB.1 | 21L (Omicron) | BA.2 | 2022-05-18 | 0.0275928 | England/BRBR-326E5248/2023|OX445849.1|2023-02-24 | AAABBBBBBBBBBBBBBBBB | (3, 17, 17) | 0.00350877 | 8 | 6 | Too_many_mutations_near_INDELs, |
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| 124 | node_1070148 | node_1393595 | node_1099607 | (12444,14408) | (22674,22898) | 21L (Omicron) | BA.2 | 22B (Omicron) | BA.5.2 | 21L (Omicron) | BA.2 | 2022-05-18 | 0.0275928 | England/BRBR-326E5248/2023|OX445849.1|2023-02-24 | BBBAAAAABBBBBBBBBBBBBBBB | (19, 5, 5) | 0.000470544 | 8 | 6 | Too_many_mutations_near_INDELs, |
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| 125 | node_1070148 | node_1099617 | node_1007852 | (12444,12880) | - | 21L (Omicron) | BA.2 | 21L (Omicron) | BA.2 | 22F (Omicron) | XBB.1 | 2022-05-18 | 0.0275928 | England/BRBR-326E5248/2023|OX445849.1|2023-02-24 | BBBAAAAAAAAAAAAAAAAA | (3, 17, 17) | 0.00350877 | 8 | 6 | Too_many_mutations_near_INDELs, |
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| 126 | node_1070148 | node_1099617 | node_1099607 | (13730,14408) | (22577,22599) | 21L (Omicron) | BA.2 | 21L (Omicron) | BA.2 | 21L (Omicron) | BA.2 | 2022-05-18 | 0.0275928 | England/BRBR-326E5248/2023|OX445849.1|2023-02-24 | BAAAAABB | (3, 5, 5) | 0.0714286 | 8 | 6 | Too_many_mutations_near_INDELs, |
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| 127 | node_1070148 | node_1099617 | node_1099607 | (12444,12880) | (22577,22599) | 21L (Omicron) | BA.2 | 21L (Omicron) | BA.2 | 21L (Omicron) | BA.2 | 2022-05-18 | 0.0275928 | England/BRBR-326E5248/2023|OX445849.1|2023-02-24 | BAAAAABB | (3, 5, 5) | 0.0714286 | 8 | 6 | Too_many_mutations_near_INDELs, |
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| 128 | node_1070148 | node_1099617 | node_1007852 | (13730,14408) | - | 21L (Omicron) | BA.2 | 21L (Omicron) | BA.2 | 22F (Omicron) | XBB.1 | 2022-05-18 | 0.0275928 | England/BRBR-326E5248/2023|OX445849.1|2023-02-24 | BBBAAAAAAAAAAAAAAAAA | (3, 17, 17) | 0.00350877 | 8 | 6 | Too_many_mutations_near_INDELs, |
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| 129 | node_1001952 | node_1001951 | node_1000261 | - | (25584,27507) | 23D (XBB.1.9) | FL.5 | 23D (XBB.1.9) | FL.5 | 23F (EG.5.1) | EG.5.1.1 | 2023-04-09 | 0.0214844 | CHN/ZJCDC814/2023|C_AA009678.1|2023-04-08 | AAAAAAAAAAAAAAABBB | (15, 3, 3) | 0.0196078 | 6 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 130 | node_1001952 | node_1001951 | node_1001840 | - | (21808,24374) | 23D (XBB.1.9) | FL.5 | 23D (XBB.1.9) | FL.5 | 23D (XBB.1.9) | FL.10 | 2023-04-09 | 0.0214844 | CHN/ZJCDC814/2023|C_AA009678.1|2023-04-08 | AAAAAAAABBB | (8, 3, 3) | 0.0545455 | 6 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 131 | node_1001952 | node_1001951 | node_1000770 | - | (22942,26951) | 23D (XBB.1.9) | FL.5 | 23D (XBB.1.9) | FL.5 | 23F (EG.5.1) | EG.5.1 | 2023-04-09 | 0.0214844 | CHN/ZJCDC814/2023|C_AA009678.1|2023-04-08 | AAAAAAAAAAAABBB | (12, 3, 3) | 0.0285714 | 6 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 132 | node_995895 | node_1054312 | node_995890 | (8659,10449) | (18151,22317) | 23D (XBB.1.9) | XBB.1.9.1 | 22F (Omicron) | XBB.2 | 23D (XBB.1.9) | XBB.1.9.1 | 2023-03-14 | 0.0205078 | Scotland/SCOT-31381/2023|2023-06-02 | BBBAAABBBBBBB | (10, 3, 3) | 0.0384615 | 4 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 133 | node_1052465 | node_1052454 | node_1017804 | (4321,11343) | (25603,28245) | 23A (Omicron) | HZ.3 | 23A (Omicron) | HZ.3 | 23A (Omicron) | XBB.1.5 | 2023-03-19 | 0.0195312 | USA/NJ-CDC-QDX48144113/2023|OQ728246.1|2023-03-19 | AAAABBB | (4, 3, 3) | 0.142857 | 3 | 3 | Too_many_mutations_near_INDELs, |
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| 134 | node_1052465 | node_1052454 | node_1009540 | - | (25603,28245) | 23A (Omicron) | HZ.3 | 23A (Omicron) | HZ.3 | 23A (Omicron) | FH.1 | 2023-03-19 | 0.0195312 | USA/NJ-CDC-QDX48144113/2023|OQ728246.1|2023-03-19 | AAAAAAAAABBB | (9, 3, 3) | 0.0454545 | 3 | 3 | Too_many_mutations_near_INDELs, |
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| 135 | node_1052465 | node_1009540 | node_1052454 | (25603,27807) | - | 23A (Omicron) | HZ.3 | 23A (Omicron) | FH.1 | 23A (Omicron) | HZ.3 | 2023-03-19 | 0.0195312 | USA/NJ-CDC-QDX48144113/2023|OQ728246.1|2023-03-19 | BBBBBBBBBAAA | (9, 3, 3) | 0.0454545 | 3 | 3 | Too_many_mutations_near_INDELs, |
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| 136 | node_1052465 | node_1002310 | node_1052454 | (25603,27259) | (28254,28297) | 23A (Omicron) | HZ.3 | 23D (XBB.1.9) | FL.9 | 23A (Omicron) | HZ.3 | 2023-03-19 | 0.0195312 | USA/NJ-CDC-QDX48144113/2023|OQ728246.1|2023-03-19 | BBBBBBBBBBBBAAABB | (14, 3, 3) | 0.0220588 | 3 | 3 | Too_many_mutations_near_INDELs, |
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| 137 | node_986614 | node_986516 | node_1017700 | (2954,15738) | - | 22F (Omicron) | XCE | 22F (Omicron) | FY.1 | 23A (Omicron) | XBB.1.5 | 2023-03-10 | 0.0183105 | CHN/SH-HG20230703-2461/2023|C_AA029680.1|2023-06-30 | BBBAAAAAAAAAAAAAA | (3, 14, 14) | 0.00588235 | 4 | 3 | Alt, |
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| 138 | node_986614 | node_986516 | node_994565 | (2954,10449) | - | 22F (Omicron) | XCE | 22F (Omicron) | FY.1 | 23D (XBB.1.9) | XBB.1.9 | 2023-03-10 | 0.0183105 | CHN/SH-HG20230703-2461/2023|C_AA029680.1|2023-06-30 | BBBAAA | (3, 3, 3) | 0.2 | 4 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 139 | node_986614 | node_986516 | node_1053228 | (16342,18811) | - | 22F (Omicron) | XCE | 22F (Omicron) | FY.1 | 22F (Omicron) | XBB.1 | 2023-03-10 | 0.0183105 | CHN/SH-HG20230703-2461/2023|C_AA029680.1|2023-06-30 | BBBAAA | (3, 3, 3) | 0.2 | 4 | 3 | PASS |
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| 140 | node_986614 | node_1053228 | node_986516 | - | (17410,18811) | 22F (Omicron) | XCE | 22F (Omicron) | XBB.1 | 22F (Omicron) | FY.1 | 2023-03-10 | 0.0183105 | CHN/SH-HG20230703-2461/2023|C_AA029680.1|2023-06-30 | AAABBB | (3, 3, 3) | 0.2 | 4 | 3 | Alt, |
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| 141 | node_986614 | node_1017700 | node_986516 | - | (2954,17124) | 22F (Omicron) | XCE | 23A (Omicron) | XBB.1.5 | 22F (Omicron) | FY.1 | 2023-03-10 | 0.0183105 | CHN/SH-HG20230703-2461/2023|C_AA029680.1|2023-06-30 | AAABBBBBBBBBBBBBB | (3, 14, 14) | 0.00588235 | 4 | 3 | Alt, |
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| 142 | node_986614 | node_986516 | node_1020847 | (10198,15738) | - | 22F (Omicron) | XCE | 22F (Omicron) | FY.1 | 23A (Omicron) | XBB.1.5 | 2023-03-10 | 0.0183105 | CHN/SH-HG20230703-2461/2023|C_AA029680.1|2023-06-30 | BBBAAAA | (3, 4, 4) | 0.114286 | 4 | 3 | Alt, |
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| 143 | node_986614 | node_986516 | node_1020847 | (15810,16342) | - | 22F (Omicron) | XCE | 22F (Omicron) | FY.1 | 23A (Omicron) | XBB.1.5 | 2023-03-10 | 0.0183105 | CHN/SH-HG20230703-2461/2023|C_AA029680.1|2023-06-30 | BBBAAAA | (3, 4, 4) | 0.114286 | 4 | 3 | Alt, |
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| 144 | node_986614 | node_986516 | node_1017700 | (15810,16342) | - | 22F (Omicron) | XCE | 22F (Omicron) | FY.1 | 23A (Omicron) | XBB.1.5 | 2023-03-10 | 0.0183105 | CHN/SH-HG20230703-2461/2023|C_AA029680.1|2023-06-30 | BBBAAAAAAAAAAAAAA | (3, 14, 14) | 0.00588235 | 4 | 3 | Alt, |
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| 145 | node_986614 | node_986516 | node_1020846 | (2954,10198) | - | 22F (Omicron) | XCE | 22F (Omicron) | FY.1 | 23A (Omicron) | XBB.1.5 | 2023-03-10 | 0.0183105 | CHN/SH-HG20230703-2461/2023|C_AA029680.1|2023-06-30 | BBBAAAAA | (3, 5, 5) | 0.0714286 | 4 | 3 | Alt, |
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| 146 | node_1001083 | node_1001092 | node_1376715 | (313,405) | (28881,29095) | 23D (XBB.1.9) | XBB.1.9.1 | 23D (XBB.1.9) | XBB.1.9.1 | 22B (Omicron) | BA.5.2.27 | 2023-02-23 | 0.0172119 | England/PHEC-YYERHYW/2023|2023-02-16 | BAAAAAABAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAB | (3, 51, 50) | 0.00645057 | 6 | 3 | Too_many_mutations_near_INDELs, |
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| 147 | node_1088077 | node_1000917 | node_1074116 | (22629,22664) | (27915,28297) | 22D (Omicron) | BY.1 | 23D (XBB.1.9) | XBB.1.9.1 | 22D (Omicron) | BN.1.2.3 | 2023-02-11 | 0.0166016 | CHN/LNCDC-202-4/2023|C_AA029044.1|2023-06-06 | BBBBBBBBBBBBBBBBBBBBBBBBBBBBBAAAAAAAB | (30, 7, 7) | 3.01103e-06 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 148 | node_1088077 | node_1088074 | node_1074116 | (22121,22331) | - | 22D (Omicron) | BY.1 | 22D (Omicron) | BY.1 | 22D (Omicron) | BN.1.2.3 | 2023-02-11 | 0.0166016 | CHN/LNCDC-202-4/2023|C_AA029044.1|2023-06-06 | BBBAAAAAAA | (3, 7, 7) | 0.0333333 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 149 | node_1088077 | node_1074116 | node_1088074 | - | (22121,22664) | 22D (Omicron) | BY.1 | 22D (Omicron) | BN.1.2.3 | 22D (Omicron) | BY.1 | 2023-02-11 | 0.0166016 | CHN/LNCDC-202-4/2023|C_AA029044.1|2023-06-06 | AAABBBBBBB | (3, 7, 7) | 0.0333333 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 150 | node_1088077 | node_1074116 | node_1026167 | - | (22331,22664) | 22D (Omicron) | BY.1 | 22D (Omicron) | BN.1.2.3 | 23A (Omicron) | XBB.1.5 | 2023-02-11 | 0.0166016 | CHN/LNCDC-202-4/2023|C_AA029044.1|2023-06-06 | AAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBB | (28, 7, 7) | 4.31258e-06 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 151 | node_1088077 | node_1074116 | node_1007852 | (241,1471) | (22629,22664) | 22D (Omicron) | BY.1 | 22D (Omicron) | BN.1.2.3 | 22F (Omicron) | XBB.1 | 2023-02-11 | 0.0166016 | CHN/LNCDC-202-4/2023|C_AA029044.1|2023-06-06 | AAAAAAAAAAAAAAAAAAAAABBBBBBB | (21, 7, 7) | 1.85805e-05 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 152 | node_1088077 | node_1074116 | node_1001075 | - | (22629,22664) | 22D (Omicron) | BY.1 | 22D (Omicron) | BN.1.2.3 | 23D (XBB.1.9) | XBB.1.9.1 | 2023-02-11 | 0.0166016 | CHN/LNCDC-202-4/2023|C_AA029044.1|2023-06-06 | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBB | (30, 7, 7) | 3.01103e-06 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 153 | node_1088077 | node_1026167 | node_1074116 | (22331,22629) | - | 22D (Omicron) | BY.1 | 23A (Omicron) | XBB.1.5 | 22D (Omicron) | BN.1.2.3 | 2023-02-11 | 0.0166016 | CHN/LNCDC-202-4/2023|C_AA029044.1|2023-06-06 | BBBBBBBBBBBBBBBBBBBBBBBBBBBBAAAAAAA | (28, 7, 7) | 4.31258e-06 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 154 | node_1088077 | node_1001805 | node_1074116 | (22331,22629) | (27915,28297) | 22D (Omicron) | BY.1 | 23D (XBB.1.9) | FL.10.2 | 22D (Omicron) | BN.1.2.3 | 2023-02-11 | 0.0166016 | CHN/LNCDC-202-4/2023|C_AA029044.1|2023-06-06 | BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBAAAAAAAB | (32, 7, 7) | 2.14551e-06 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 155 | node_1088077 | node_1001075 | node_1074116 | (22629,22664) | - | 22D (Omicron) | BY.1 | 23D (XBB.1.9) | XBB.1.9.1 | 22D (Omicron) | BN.1.2.3 | 2023-02-11 | 0.0166016 | CHN/LNCDC-202-4/2023|C_AA029044.1|2023-06-06 | BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBAAAAAAA | (30, 7, 7) | 3.01103e-06 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 156 | node_1089661 | node_1088519 | node_1089650 | (5748,9424) | (22747,22893) | 22D (Omicron) | XCA | 22D (Omicron) | BA.2.75.2 | 22D (Omicron) | BA.2.75 | 2023-01-14 | 0.0164795 | England/PHEC-YYEXH99/2023|OX913363.1|2023-03-22 | AAAABBBBBBBBBBBBBBBB | (4, 16, 16) | 0.00103199 | 11 | 4 | Alt, |
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| 157 | node_1089661 | node_1089650 | node_1088519 | (22747,22893) | - | 22D (Omicron) | XCA | 22D (Omicron) | BA.2.75 | 22D (Omicron) | BA.2.75.2 | 2023-01-14 | 0.0164795 | England/PHEC-YYEXH99/2023|OX913363.1|2023-03-22 | BBBBAAAAAAAAAAAAAAAA | (4, 16, 16) | 0.00103199 | 11 | 4 | PASS |
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| 158 | node_1089661 | node_1088519 | node_1089650 | (9454,11124) | (22747,22893) | 22D (Omicron) | XCA | 22D (Omicron) | BA.2.75.2 | 22D (Omicron) | BA.2.75 | 2023-01-14 | 0.0164795 | England/PHEC-YYEXH99/2023|OX913363.1|2023-03-22 | AAAABBBBBBBBBBBBBBBB | (4, 16, 16) | 0.00103199 | 11 | 4 | Alt, |
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| 159 | node_1089661 | node_1088519 | node_1089650 | (4783,5192) | (22747,22893) | 22D (Omicron) | XCA | 22D (Omicron) | BA.2.75.2 | 22D (Omicron) | BA.2.75 | 2023-01-14 | 0.0164795 | England/PHEC-YYEXH99/2023|OX913363.1|2023-03-22 | AAAABBBBBBBBBBBBBBBB | (4, 16, 16) | 0.00103199 | 11 | 4 | Alt, |
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| 160 | node_1089661 | node_1088519 | node_1089650 | (2062,4586) | (22747,22893) | 22D (Omicron) | XCA | 22D (Omicron) | BA.2.75.2 | 22D (Omicron) | BA.2.75 | 2023-01-14 | 0.0164795 | England/PHEC-YYEXH99/2023|OX913363.1|2023-03-22 | AAAABBBBBBBBBBBBBBBB | (4, 16, 16) | 0.00103199 | 11 | 4 | Alt, |
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| 161 | node_1089661 | node_1088519 | node_1089650 | - | (22747,22893) | 22D (Omicron) | XCA | 22D (Omicron) | BA.2.75.2 | 22D (Omicron) | BA.2.75 | 2023-01-14 | 0.0164795 | England/PHEC-YYEXH99/2023|OX913363.1|2023-03-22 | AAAABBBBBBBBBBBBBBBB | (4, 16, 16) | 0.00103199 | 11 | 4 | Alt, |
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| 162 | node_1007855 | node_1085298 | node_994563 | (241,1545) | (12789,15738) | 22F (Omicron) | XCC | 23C (CH.1.1) | CH.1.1.1 | 23D (XBB.1.9) | XBB.1.9 | 2023-02-14 | 0.0161133 | England/BRBR-32718481/2023|OX901556.1|2023-04-11 | AAAAAAAABBBBBBBBBBBBBBBBBBBBBBBBBBBBBB | (8, 30, 30) | 1.84036e-07 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump, |
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| 163 | node_1007855 | node_1085298 | node_1001083 | - | (12789,15738) | 22F (Omicron) | XCC | 23C (CH.1.1) | CH.1.1.1 | 23D (XBB.1.9) | XBB.1.9.1 | 2023-02-14 | 0.0161133 | England/BRBR-32718481/2023|OX901556.1|2023-04-11 | AAAAAAAAAAAAABBBBBBBBBBBBBBBBBBBBABBBBBBBBBBA | (15, 30, 29) | 1.91668e-09 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump, |
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| 164 | node_1007855 | node_1081938 | node_994563 | (241,1545) | (12444,12789) | 22F (Omicron) | XCC | 23C (CH.1.1) | CH.1.1.1 | 23D (XBB.1.9) | XBB.1.9 | 2023-02-14 | 0.0161133 | England/BRBR-32718481/2023|OX901556.1|2023-04-11 | AAAAAAAABBBBBBBBBBBBBBBBBBBBBBBBBBBBB | (8, 29, 29) | 2.33112e-07 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump, |
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| 165 | node_1007855 | node_1081938 | node_1001083 | - | (12444,12789) | 22F (Omicron) | XCC | 23C (CH.1.1) | CH.1.1.1 | 23D (XBB.1.9) | XBB.1.9.1 | 2023-02-14 | 0.0161133 | England/BRBR-32718481/2023|OX901556.1|2023-04-11 | AAAAAAAAAAAAABBBBBBBBBBBBBBBBBBBBABBBBBBBBBA | (15, 29, 28) | 2.80978e-09 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump, |
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| 166 | node_1007855 | node_1001083 | node_1085298 | (12789,15738) | (28297,29095) | 22F (Omicron) | XCC | 23D (XBB.1.9) | XBB.1.9.1 | 23C (CH.1.1) | CH.1.1.1 | 2023-02-14 | 0.0161133 | England/BRBR-32718481/2023|OX901556.1|2023-04-11 | BBBBBBBBBBBBBAAAAAAAAAAAAAAAAAAAABAAAAAAAAAAB | (15, 30, 29) | 1.91668e-09 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump, |
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| 167 | node_1007855 | node_1001083 | node_1081938 | (12444,12789) | (28297,29095) | 22F (Omicron) | XCC | 23D (XBB.1.9) | XBB.1.9.1 | 23C (CH.1.1) | CH.1.1.1 | 2023-02-14 | 0.0161133 | England/BRBR-32718481/2023|OX901556.1|2023-04-11 | BBBBBBBBBBBBBAAAAAAAAAAAAAAAAAAAABAAAAAAAAAB | (15, 29, 28) | 2.80978e-09 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump, |
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| 168 | node_1017671 | node_1012526 | node_1041397 | - | (10204,17079) | 23A (Omicron) | XBB.1.5 | 23A (Omicron) | XBB.1.5 | 23A (Omicron) | XBB.1.5.52 | 2023-03-27 | 0.015625 | USA/MN-CDC-QDX48685584/2023|OQ827443.1|2023-04-01 | AAABBBB | (3, 4, 4) | 0.114286 | 4 | 3 | PASS |
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| 169 | node_1017671 | node_1041397 | node_1014540 | (10204,17079) | - | 23A (Omicron) | XBB.1.5 | 23A (Omicron) | XBB.1.5.52 | 23A (Omicron) | XBB.1.5 | 2023-03-27 | 0.015625 | USA/MN-CDC-QDX48685584/2023|OQ827443.1|2023-04-01 | BBBAAAA | (3, 4, 4) | 0.114286 | 4 | 3 | Alt, |
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| 170 | node_1001075 | node_1053238 | node_996327 | (23018,23401) | (28271,29376) | 23D (XBB.1.9) | XBB.1.9.1 | 22F (Omicron) | XBB.1 | 23D (XBB.1.9) | XBB.1.9.2 | 2023-02-21 | 0.0146484 | IMS-10122-CVDP-7BD8FB36-22C1-42C3-A674-E13300DE465D|OY048409.1|2023-03-15 | BBBBBBAAAB | (7, 3, 3) | 0.0666667 | 3 | 3 | PASS |
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| 171 | node_1001075 | node_1000917 | node_1053532 | - | (23018,23401) | 23D (XBB.1.9) | XBB.1.9.1 | 23D (XBB.1.9) | XBB.1.9.1 | 22F (Omicron) | XBB.7 | 2023-02-21 | 0.0146484 | IMS-10122-CVDP-7BD8FB36-22C1-42C3-A674-E13300DE465D|OY048409.1|2023-03-15 | AAAAAABBB | (6, 3, 3) | 0.0833333 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 172 | node_1001075 | node_1000917 | node_1054161 | (405,4321) | (23018,23401) | 23D (XBB.1.9) | XBB.1.9.1 | 23D (XBB.1.9) | XBB.1.9.1 | 22F (Omicron) | XBB.2.5 | 2023-02-21 | 0.0146484 | IMS-10122-CVDP-7BD8FB36-22C1-42C3-A674-E13300DE465D|OY048409.1|2023-03-15 | AAAAABBB | (5, 3, 3) | 0.107143 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 173 | node_1001075 | node_1000917 | node_1054161 | (5720,5720) | (23018,23401) | 23D (XBB.1.9) | XBB.1.9.1 | 23D (XBB.1.9) | XBB.1.9.1 | 22F (Omicron) | XBB.2.5 | 2023-02-21 | 0.0146484 | IMS-10122-CVDP-7BD8FB36-22C1-42C3-A674-E13300DE465D|OY048409.1|2023-03-15 | AAAAABBB | (5, 3, 3) | 0.107143 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 174 | node_1001075 | node_1000921 | node_995592 | (5720,10449) | (23401,27915) | 23D (XBB.1.9) | XBB.1.9.1 | 23D (XBB.1.9) | XBB.1.42 | 23D (XBB.1.9) | XBB.1.9.1 | 2023-02-21 | 0.0146484 | IMS-10122-CVDP-7BD8FB36-22C1-42C3-A674-E13300DE465D|OY048409.1|2023-03-15 | BAAABB | (3, 3, 3) | 0.2 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 175 | node_1001075 | node_1053238 | node_1000917 | (23018,23401) | (28311,29376) | 23D (XBB.1.9) | XBB.1.9.1 | 22F (Omicron) | XBB.1 | 23D (XBB.1.9) | XBB.1.9.1 | 2023-02-21 | 0.0146484 | IMS-10122-CVDP-7BD8FB36-22C1-42C3-A674-E13300DE465D|OY048409.1|2023-03-15 | BBBBBAAAB | (6, 3, 3) | 0.0833333 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 176 | node_1001075 | node_997267 | node_1007612 | - | (23401,27507) | 23D (XBB.1.9) | XBB.1.9.1 | 23D (XBB.1.9) | EG.1 | 22F (Omicron) | XBB.1 | 2023-02-21 | 0.0146484 | IMS-10122-CVDP-7BD8FB36-22C1-42C3-A674-E13300DE465D|OY048409.1|2023-03-15 | AAAAAABBBB | (6, 4, 4) | 0.0333333 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 177 | node_1011993 | node_962974 | node_1011992 | (26275,26709) | (27807,27915) | 23A (Omicron) | XBB.1.5 | 21L (Omicron) | BA.2 | 23A (Omicron) | XBB.1.5 | 2023-03-07 | 0.0141602 | Northern_Ireland/NIRE-02039a/2023|2023-03-14 | BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBAAAB | (31, 3, 3) | 0.00534759 | 4 | 3 | Too_many_mutations_near_INDELs, |
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| 178 | node_920080 | node_1488200 | node_1545724 | - | (23403,26060) | 21M (Omicron) | BA.2_dropout | 21M (Omicron) | BA.2_dropout | 21K (Omicron) | BA.1 | 2021-12-08 | 0.0127206 | USA/TX-HHD-2207076166/2022|OP226380.1|2022-06-29 | AAAAAAAAAAAAAAAABAAAAAABBBB | (22, 5, 4) | 0.00709773 | 6 | 4 | Too_many_mutations_near_INDELs, |
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| 179 | node_920080 | node_1488200 | node_1503048 | - | (24424,26060) | 21M (Omicron) | BA.2_dropout | 21M (Omicron) | BA.2_dropout | 21K (Omicron) | BA.1 | 2021-12-08 | 0.0127206 | USA/TX-HHD-2207076166/2022|OP226380.1|2022-06-29 | ABAAAAAAABAAAAAAAABAABABBBB | (19, 8, 4) | 0.106665 | 6 | 4 | Too_many_mutations_near_INDELs, |
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| 180 | node_920080 | node_1503048 | node_1488200 | (24130,26060) | (27383,27384) | 21M (Omicron) | BA.2_dropout | 21K (Omicron) | BA.1 | 21M (Omicron) | BA.2_dropout | 2021-12-08 | 0.0127206 | USA/TX-HHD-2207076166/2022|OP226380.1|2022-06-29 | BABBBBBBBABBBBBBBBABBABAAAA | (19, 8, 4) | 0.106665 | 6 | 4 | Too_many_mutations_near_INDELs, |
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| 181 | node_920080 | node_1503048 | node_1488200 | (24130,26060) | - | 21M (Omicron) | BA.2_dropout | 21K (Omicron) | BA.1 | 21M (Omicron) | BA.2_dropout | 2021-12-08 | 0.0127206 | USA/TX-HHD-2207076166/2022|OP226380.1|2022-06-29 | BABBBBBBBABBBBBBBBABBABAAAA | (19, 8, 4) | 0.106665 | 6 | 4 | Too_many_mutations_near_INDELs, |
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| 182 | node_920080 | node_1545724 | node_1488200 | (23202,23948) | (27383,27384) | 21M (Omicron) | BA.2_dropout | 21K (Omicron) | BA.1 | 21M (Omicron) | BA.2_dropout | 2021-12-08 | 0.0127206 | USA/TX-HHD-2207076166/2022|OP226380.1|2022-06-29 | BBBBBBBBBBBBBBBBABBBBBBAAAA | (22, 5, 4) | 0.00709773 | 6 | 4 | Too_many_mutations_near_INDELs, |
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| 183 | node_920080 | node_1545724 | node_1488200 | (23202,23948) | - | 21M (Omicron) | BA.2_dropout | 21K (Omicron) | BA.1 | 21M (Omicron) | BA.2_dropout | 2021-12-08 | 0.0127206 | USA/TX-HHD-2207076166/2022|OP226380.1|2022-06-29 | BBBBBBBBBBBBBBBBABBBBBBAAAA | (22, 5, 4) | 0.00709773 | 6 | 4 | Too_many_mutations_near_INDELs, |
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| 184 | node_1488342 | node_1488220 | node_611470 | (22578,22674) | (27718,27752) | 21M (Omicron) | XBC | 21M (Omicron) | XAY | 21I (Delta) | AY.38 | 2022-09-21 | 0.0124087 | England/PHEC-YYENTGZ/2023|2023-02-05 | AAAABBBBABBBBBBBBAAAAAAAAAAAAAAAAAAAAAAAAAAABBABBBBBB | (33, 20, 11) | 0.000442384 | 41 | 16 | Too_many_mutations_near_INDELs, |
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| 185 | node_1088074 | node_1001075 | node_1073707 | (22629,22664) | - | 22D (Omicron) | BY.1 | 23D (XBB.1.9) | XBB.1.9.1 | 22D (Omicron) | BN.1 | 2023-01-13 | 0.0112305 | England/PHEC-YYEAHG9/2023|2023-05-14 | BBBBBBBBBBBBBBBBBBBBBBBBBBBAAAAAA | (27, 6, 6) | 2.52806e-05 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 186 | node_1088074 | node_1001805 | node_1073707 | (22331,22629) | (27915,28297) | 22D (Omicron) | BY.1 | 23D (XBB.1.9) | FL.10.2 | 22D (Omicron) | BN.1 | 2023-01-13 | 0.0112305 | England/PHEC-YYEAHG9/2023|2023-05-14 | BBBBBBBBBBBBBBBBBBBBBBBBBBBBAAAAAAB | (29, 6, 6) | 1.84825e-05 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 187 | node_1088074 | node_1026167 | node_1073707 | (22331,22629) | - | 22D (Omicron) | BY.1 | 23A (Omicron) | XBB.1.5 | 22D (Omicron) | BN.1 | 2023-01-13 | 0.0112305 | England/PHEC-YYEAHG9/2023|2023-05-14 | BBBBBBBBBBBBBBBBBBBBBBBBBAAAAAA | (25, 6, 6) | 3.53126e-05 | 3 | 3 | Too_many_mutations_near_INDELs,Suspicious_mutation_clump,Informative_sites_clump, |
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| 188 | node_1088074 | node_1073707 | node_1001075 | - | (22629,22664) | 22D (Omicron) | BY.1 |